xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-09-15 12:47:57 +08:00
Code Issues Packages Projects Releases Wiki Activity

update README

Browse Source
This commit is contained in:
chhylp123
2024-10-13 19:07:51 -04:00
parent 63d51c3441
commit b01614fd71
1 changed files with 2 additions and 2 deletions
Download Patch File Download Diff File Expand all files Collapse all files

4
README.md
View File

@@ -23,10 +23,10 @@ yak count -b37 -t16 -o pat.yak <(cat pat_1.fq.gz pat_2.fq.gz) <(cat pat_1.fq.gz
yak count -b37 -t16 -o mat.yak <(cat mat_1.fq.gz mat_2.fq.gz) <(cat mat_1.fq.gz mat_2.fq.gz)
hifiasm -o HG002.asm -t32 -1 pat.yak -2 mat.yak HG002-HiFi.fa.gz
# Improve contiguity for diploid genome assembly by self-scaffolding
# Improve contiguity for diploid genome assembly by self-scaffolding (`--dual-scaf`)
hifiasm -o HG002.asm --dual-scaf --h1 read1.fq.gz --h2 read2.fq.gz HG002-HiFi.fq.gz
# Preserve more telomeres for human genomes
# Preserve more telomeres for human genomes (`--telo-m CCCTAA`)
hifiasm -o HG002.asm --telo-m CCCTAA --h1 read1.fq.gz --h2 read2.fq.gz HG002-HiFi.fq.gz
# Hybrid assembly with HiFi, ultralong and Hi-C reads