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Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly

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chhylp123
2021-02-14 00:00:55 -05:00
parent 02fa015e28 88f6261f7a
commit dd48e3e15e
2 changed files with 6 additions and 2 deletions
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Makefile
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@@ -43,7 +43,7 @@ Assembly.o: kthread.h
CommandLines.o: CommandLines.h ketopt.h
Correct.o: Correct.h Hash_Table.h htab.h Process_Read.h Overlaps.h kvec.h
Correct.o: kdq.h CommandLines.h Levenshtein_distance.h POA.h Assembly.h
Correct.o: ksw2.h
Correct.o: ksw2.h ksort.h
Hash_Table.o: Hash_Table.h htab.h Process_Read.h Overlaps.h kvec.h kdq.h
Hash_Table.o: CommandLines.h ksort.h
Levenshtein_distance.o: Levenshtein_distance.h

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README.md
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@@ -192,4 +192,8 @@ page](https://github.com/chhylp123/hifiasm/issues).
## Limitations
1. Purging haplotig duplications may introduce misassemblies.
1. Purging haplotig duplications may introduce misassemblies.
## Citation
Cheng, H., Concepcion, G.T., Feng, X., Zhang, H., Li H. Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm. Nat Methods 18, 170–175 (2021). https://doi.org/10.1038/s41592-020-01056-5