xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-09-15 12:47:57 +08:00
Code Issues Packages Projects Releases Wiki Activity

clarify that hifiasm doesn't do scaffolding

Browse Source
This commit is contained in:
Heng Li
2021-04-17 16:28:12 -04:00
parent 325bcebf9c
commit dfd7720f5a
1 changed files with 3 additions and 0 deletions
Download Patch File Download Diff File Expand all files Collapse all files

3
README.md
View File

@@ -119,6 +119,9 @@ challenging. Users should not expect hifiasm to phase entire chromosomes at the
moment. Also, contigs from different parental chromosomes are randomly mixed as
it is just not possible to phase across chromosomes with Hi-C.
Hifiasm does not perform scaffolding for now. You need to run a standalone
scaffolder such as SALSA or 3D-DNA to scaffold phased haplotigs.
### <a name="trio"></a>Trio binning
When parental short reads are available, hifiasm can also generate a pair of