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clarify that hifiasm doesn't do scaffolding

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Heng Li
2021-04-17 16:28:12 -04:00
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README.md
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@@ -119,6 +119,9 @@ challenging. Users should not expect hifiasm to phase entire chromosomes at the
moment. Also, contigs from different parental chromosomes are randomly mixed as moment. Also, contigs from different parental chromosomes are randomly mixed as
it is just not possible to phase across chromosomes with Hi-C. it is just not possible to phase across chromosomes with Hi-C.
Hifiasm does not perform scaffolding for now. You need to run a standalone
scaffolder such as SALSA or 3D-DNA to scaffold phased haplotigs.
### <a name="trio"></a>Trio binning ### <a name="trio"></a>Trio binning
When parental short reads are available, hifiasm can also generate a pair of When parental short reads are available, hifiasm can also generate a pair of