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Haoyu Cheng
2019-12-26 16:46:08 -05:00
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README.md
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@@ -13,7 +13,7 @@ Hifiasm is an ultrafast haplotype-resolved de novo assembler based on PacBio Hif
Hifiasm is a standalone and lightweight assembler, which does not need external libraries (except zlib). For large genomes, it can generate high-quality assembly in a few hours. Hifiasm has been tested on the following datasets:
|<sub>Dataset<sub>|<sub>GSize<sub>|<sub>Cov<sub>|<sub>Asm options<sub>|<sub>CPU time<sub>|<sub>Wall time<sub>|<sub>RAM<sub>|<sub>[unitig][unitig]/contig N50<sup>[1]</sup><sub>|
|<sub>Dataset<sub>|<sub>GSize<sub>|<sub>Cov<sub>|<sub>Asm options<sub>|<sub>CPU time<sub>|<sub>Wall time<sub>|<sub>RAM<sub>|<sub>[unitig][unitig]/[contig][unitig] N50<sup>[1]</sup><sub>|
|:---------------|-----:|-----:|:---------------------|-------:|--------:|----:|----------------:|
|<sub>[Human NA12878]<sub>|<sub>3Gb<sub>|<sub>x28<sub>|<sub>-k 40 -t 42 -r 2<sub>|<sub>200h<sub>| <sub>5h32m<sub>|<sub>?114G<sub>|<sub>93.5Kb/18.6Mb<sub>|
|<sub>[Human HG002]<sub>|<sub>3Gb<sub>|<sub>x43<sub>|<sub>-k 40 -t 42 -r 2<sub>|<sub>?405h<sub>|<sub>?10h12m<sub>|<sub>?122G<sub>|<sub>320kb/29Mb<sub>|