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r182: explain -N

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Heng Li
2020-04-03 10:42:09 -04:00
parent 968b4caef9
commit ffba3ce0ef
2 changed files with 2 additions and 1 deletions
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CommandLines.cpp
+1
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@@ -29,6 +29,7 @@ void Print_H(hifiasm_opt_t* asm_opt)
fprintf(stderr, " -w INT minimizer window size [%d]\n", asm_opt->mz_win); fprintf(stderr, " -w INT minimizer window size [%d]\n", asm_opt->mz_win);
fprintf(stderr, " -f INT number of bits for bloom filter [%d]\n", asm_opt->bf_shift); fprintf(stderr, " -f INT number of bits for bloom filter [%d]\n", asm_opt->bf_shift);
fprintf(stderr, " -D FLOAT drop k-mers occuring >FLOAT*coverage times [%.1f]\n", asm_opt->high_factor); fprintf(stderr, " -D FLOAT drop k-mers occuring >FLOAT*coverage times [%.1f]\n", asm_opt->high_factor);
fprintf(stderr, " -N INT consider up to INT overlaps for each oriented read [%d]\n", asm_opt->max_n_chain);
///fprintf(stderr, " -l load all overlaps from disk, can avoid overlap calculation [%d]\n", asm_opt->load_index_from_disk); ///fprintf(stderr, " -l load all overlaps from disk, can avoid overlap calculation [%d]\n", asm_opt->load_index_from_disk);
///fprintf(stderr, " -i ignore saved overlaps in *.ovlp*.bin files\n"); ///fprintf(stderr, " -i ignore saved overlaps in *.ovlp*.bin files\n");
fprintf(stderr, " -i ignore saved overlaps in *.ovlp* files\n"); fprintf(stderr, " -i ignore saved overlaps in *.ovlp* files\n");
CommandLines.h
+1 -1
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@@ -3,7 +3,7 @@
#include <pthread.h> #include <pthread.h>
#define HA_VERSION "0.3.0-dirty-r181" #define HA_VERSION "0.3.0-dirty-r182"
#define VERBOSE 0 #define VERBOSE 0
#define VERBOSE_GFA 0 #define VERBOSE_GFA 0