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Author	SHA1	Message	Date
chhylp123	a674110b23	fixed het/hom node bugs	2022-12-08 03:07:14 -05:00
chhylp123	6743dcf204	Merge pull request #363 from chhylp123/hifiasm_dev_debug ... cleaner assembly graph 0.18.1	2022-12-06 09:52:47 -05:00
chhylp123	a3b72457f0	cleaner assembly graph	2022-12-06 09:52:00 -05:00
chhylp123	5b928dfe1d	Merge pull request #361 from chhylp123/hifiasm_dev_debug ... r465 0.18.0	2022-12-02 09:41:42 -05:00
chhylp123	786f8bdff0	r465	2022-12-02 09:40:25 -05:00
chhylp123	2400236f7c	Merge pull request #358 from chhylp123/hifiasm_dev_debug ... slightly better assembly graph 0.17.7	2022-11-28 14:47:35 -05:00
chhylp123	a4d6cebc32	slightly better assembly graph	2022-11-28 14:42:48 -05:00
chhylp123	25dcaaabec	Merge pull request #356 from chhylp123/hifiasm_dev_debug ... Hifiasm dev debug r460	2022-11-25 20:51:04 -05:00
chhylp123	9a454576e1	fixed memory issue within gen_single_khit	2022-11-25 20:49:14 -05:00
chhylp123	6de08fd91f	debug assert	2022-11-25 15:20:32 -05:00
chhylp123	deb31948e1	Merge pull request #354 from chhylp123/hifiasm_dev_debug ... fixed gap filling with UL r458	2022-11-25 11:49:27 -05:00
chhylp123	fc76af1285	fixed gap filling with UL	2022-11-25 11:46:37 -05:00
chhylp123	b84e7ec328	Merge pull request #351 from chhylp123/hifiasm_dev_debug ... 0.17.4-r455 r455	2022-11-17 18:06:11 -05:00
chhylp123	979d83f68d	0.17.4-r455	2022-11-17 18:05:35 -05:00
chhylp123	f9c5e09388	Merge pull request #350 from chhylp123/hifiasm_dev_debug ... r454	2022-11-17 18:04:35 -05:00
chhylp123	9747c42123	r454	2022-11-17 18:02:52 -05:00
chhylp123	b4b53b8efd	Merge pull request #349 from chhylp123/hifiasm_dev_debug ... bugs for bubble/hom assembly	2022-11-17 18:01:50 -05:00
chhylp123	553a8745cc	bugs for bubble/hom assembly	2022-11-17 18:01:08 -05:00
chhylp123	a1867ec9a2	Merge pull request #347 from chhylp123/hifiasm_dev_debug ... update README 0.17.3	2022-11-17 12:29:12 -05:00
chhylp123	1afecdcecc	update README	2022-11-17 12:26:33 -05:00
chhylp123	66ad203018	Merge pull request #346 from chhylp123/hifiasm_dev_debug ... fix utg el bug	2022-11-17 12:19:28 -05:00
chhylp123	152bae2dfb	fix utg el bug	2022-11-17 12:18:40 -05:00
chhylp123	22c44befa5	Merge pull request #345 from chhylp123/hifiasm_dev_debug ... merge UL	2022-11-17 09:33:40 -05:00
chhylp123	9831afaf26	code clean	2022-11-17 09:31:56 -05:00
chhylp123	2c7b164f11	tmp cache	2022-11-10 19:37:52 -05:00
chhylp123	46acc8a2f6	version with wrong realignment	2022-11-07 02:35:26 -05:00
chhylp123	612c1ab712	cuttoff before debugging	2022-11-05 09:03:23 -04:00
chhylp123	e66c003b65	cleaner graph	2022-11-01 21:44:13 -04:00
chhylp123	f4b6223fde	cutoff-r426-avoid-tip	2022-10-31 15:18:52 -04:00
chhylp123	3d1787e57a	ul_refine_alignment	2022-10-29 17:15:19 -04:00
chhylp123	249bee7304	done contain clean	2022-10-27 17:05:46 -04:00
chhylp123	df3e0eeaa3	read extract	2022-10-19 13:23:25 -04:00
chhylp123	3d65bef9de	adjusted chain sc	2022-10-09 18:14:07 -04:00
chhylp123	1d0562ebd1	done second alignment	2022-10-09 16:59:54 -04:00
chhylp123	2443e63ef5	done chaining	2022-10-08 14:51:03 -04:00
chhylp123	f92cef38f2	uodate gchain	2022-10-07 15:14:08 -04:00
chhylp123	8a4d6a5f24	done alignemnt	2022-10-04 15:31:23 -04:00
chhylp123	68a74fb16d	cigar collect	2022-10-02 14:38:49 -04:00
chhylp123	41437764f0	before window filling	2022-10-01 23:42:38 -04:00
chhylp123	bbd3394b4a	lack final alignment	2022-10-01 19:53:02 -04:00
chhylp123	20a7dac82a	backup for minimizer	2022-09-28 11:16:09 -04:00
chhylp123	236bc7b9ee	backup for minimizer	2022-09-28 11:15:29 -04:00
chhylp123	4c873f9a66	large extension	2022-09-24 22:39:07 -04:00
chhylp123	a297105258	cal_exz_infi	2022-09-24 16:16:54 -04:00
chhylp123	38e00d2086	shared seeds	2022-09-23 22:17:38 -04:00
chhylp123	f4cc895fa0	update ed	2022-09-20 22:48:59 -04:00
chhylp123	4e7bb7eeb9	fix cigar	2022-09-18 23:17:58 -04:00
chhylp123	774c585562	infi ed	2022-09-16 21:34:36 -04:00
chhylp123	54b733ef2f	inner define	2022-09-14 21:10:31 -04:00
chhylp123	69d0e18fe5	ed macro	2022-09-14 15:38:55 -04:00