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Code Issues Packages Projects Releases Wiki Activity
619 Commits 11 Branches 54 Tags
1ac574adc78fbdaed2d2dcd49d5ea3deed7478de
Commit Graph
242 Commits
Author SHA1 Message Date
chhylp123 61ceb3a4e1 fix bubble issue 2023-11-06 00:09:38 -05:00
chhylp123 4ca8951f9d fix bug for gen_contain_consensus_chain 2023-10-22 13:23:27 -04:00
chhylp123 281ae6ba89 add scaffolding 2023-10-10 12:40:29 -04:00
chhylp123 c7685e6f19 checkpoint for scaffolding 2023-09-15 12:58:34 -04:00
chhylp123 858b95a3bb disable multiple assertions 2023-08-17 19:58:35 -04:00
chhylp123 64091a76a5 fix filter_short_ulalignments 2023-07-19 19:11:37 -04:00
chhylp123 adeb2c603d trio-dual/bug for hic phasing 2023-05-31 14:54:50 -04:00
chhylp123 44475e2665 remove ksw2 from makefile 2023-05-12 20:57:11 -04:00
chhylp123 2c18ec30da fix memory leak of print_utg 2023-05-12 11:31:34 -04:00
chhylp123 18b649aadb fixed missing/false duplication for diploid asm 2023-04-17 19:58:00 -04:00
chhylp123 0efcc14499 fix chain spliting bug 2023-04-14 16:43:41 -04:00
chhylp123 84e642d20d fix bubble on-the-fly 2023-04-13 10:16:14 -04:00
chhylp123 5df5892f33 update for rescuing missing contigs 2023-04-06 23:14:41 -04:00
chhylp123 503cd0f7cc 0.19.2->0.19.3 2023-03-22 12:25:39 -04:00
chhylp123 86b7dd424a avoid misassemblies; better polyploidy graph 2023-03-22 12:23:53 -04:00
chhylp123 d4773a497f disable postjoin for the ul assembly 2023-03-13 15:43:22 -04:00
chhylp123 f67faa9c34 path-max and path-min to avoid misassemblies 2023-03-13 11:13:57 -04:00
chhylp123 3407c7029e coverage adjustment for polyploidy 2023-03-12 17:02:29 -04:00
chhylp123 b533067835 enable dbg-ovec 2023-03-10 23:30:24 -05:00
chhylp123 384b721d84 clean output 2023-03-10 15:46:23 -05:00
chhylp123 8b79a3f22e disable function for tangles with low-coverage ul 2023-03-10 15:34:10 -05:00
chhylp123 af4be8ca1a disable integer correction; disable contain dedup 2023-03-10 09:12:07 -05:00
chhylp123 85c643e85d clean contained read; fixed for deep_graph_clean 2023-03-07 15:28:24 -05:00
chhylp123 a0f2f70d91 better resolution for complex regions 2023-02-27 09:35:50 -05:00
chhylp123 04f660fd8c bug fixed for mask calculation 2023-02-24 00:36:52 -05:00
chhylp123 2b4b4f29e0 r525 2023-02-21 20:22:56 -05:00
chhylp123 8ea2d5a622 r523-phasing-across chains 2023-02-21 15:44:45 -05:00
chhylp123 7d5c793109 additional cluster for phasing 2023-02-20 23:38:27 -05:00
chhylp123 3abd3793fb clean graph alignment 2023-02-20 14:50:55 -05:00
chhylp123 b55e4396d2 prt_dbg_gfa -> before transitive reduction 2023-02-17 11:00:15 -05:00
chhylp123 fc598d71f6 0.18.6 -> 0.18.7 2023-02-16 12:16:24 -05:00
chhylp123 286b897881 r513 2023-02-16 00:04:06 -05:00
chhylp123 f2da12a2ad 508 —> futhur graph cleaning 2023-02-12 22:49:12 -05:00
chhylp123 1166b92eb4 r502->additional alignment 2023-01-25 09:39:41 -05:00
chhylp123 78ef43ce8e r500 2023-01-23 15:28:43 -05:00
chhylp123 db2edc0ffb fix exit(1) for bin_only 2023-01-23 15:25:01 -05:00
chhylp123 25d6857d44 r499->false duplications 2023-01-17 04:49:56 -05:00
chhylp123 2bf5119bb5 update help information 2023-01-12 01:22:34 -05:00
chhylp123 197cd4d77e 0.18.3 -> 0.18.4 2023-01-12 00:22:23 -05:00
chhylp123 7ad498f631 r495-reuse misjoin detection 2023-01-12 00:21:43 -05:00
chhylp123 0613b18af9 r493 ->HiC/UL/Trans 2023-01-11 20:38:45 -05:00
chhylp123 a674110b23 fixed het/hom node bugs 2022-12-08 03:07:14 -05:00
chhylp123 a3b72457f0 cleaner assembly graph 2022-12-06 09:52:00 -05:00
chhylp123 786f8bdff0 r465 2022-12-02 09:40:25 -05:00
chhylp123 a4d6cebc32 slightly better assembly graph 2022-11-28 14:42:48 -05:00
chhylp123 9a454576e1 fixed memory issue within gen_single_khit 2022-11-25 20:49:14 -05:00
chhylp123 6de08fd91f debug assert 2022-11-25 15:20:32 -05:00
chhylp123 fc76af1285 fixed gap filling with UL 2022-11-25 11:46:37 -05:00
chhylp123 979d83f68d 0.17.4-r455 2022-11-17 18:05:35 -05:00
chhylp123 9747c42123 r454 2022-11-17 18:02:52 -05:00