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clean output

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chhylp123
2023-03-10 15:46:23 -05:00
parent 8b79a3f22e
commit 384b721d84
2 changed files with 11 additions and 11 deletions
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CommandLines.h
+1 -1
View File
@@ -5,7 +5,7 @@
#include <pthread.h>
#include <stdint.h>
#define HA_VERSION "0.19.0-r553"
#define HA_VERSION "0.19.0-r554"
#define VERBOSE 0
gfa_ut.cpp
+10 -10
View File
@@ -16473,7 +16473,7 @@ ul2ul_idx_t *gen_ul2ul(ul_resolve_t *uidx, ug_opt_t *uopt, ulg_opt_t *ulopt, uin
kt_for(uidx->str_b.n_thread, worker_integert_debug_sym, uidx, z->tot);///all ul + ug
print_integert_ovlp_stat(z);
print_uls_seq(uidx, asm_opt.output_file_name);
// print_uls_seq(uidx, asm_opt.output_file_name);
// print_uls_ovs(uidx, asm_opt.output_file_name);
z->i_g = integer_sg_gen(uidx, uopt->min_ovlp);
@@ -17234,11 +17234,11 @@ ul_renew_t *ropt, const char *bin_file, uint64_t free_uld, uint64_t is_bridg, ui
// fprintf(stderr, "2[M::%s]\n", __func__);
// exit(1);
char* gfa_name = NULL; MALLOC(gfa_name, strlen(o_file)+strlen(bin_file)+50);
sprintf(gfa_name, "%s.%s", o_file, bin_file);
print_debug_gfa(sg, init_ug, uopt->coverage_cut, gfa_name, uopt->sources, uopt->ruIndex, uopt->max_hang, uopt->min_ovlp, 0, 0, 0);
print_debug_gfa(sg, init_ug, uopt->coverage_cut, gfa_name, uopt->sources, uopt->ruIndex, uopt->max_hang, uopt->min_ovlp, 0, 0, 1);
free(gfa_name);
// char* gfa_name = NULL; MALLOC(gfa_name, strlen(o_file)+strlen(bin_file)+50);
// sprintf(gfa_name, "%s.%s", o_file, bin_file);
// print_debug_gfa(sg, init_ug, uopt->coverage_cut, gfa_name, uopt->sources, uopt->ruIndex, uopt->max_hang, uopt->min_ovlp, 0, 0, 0);
// print_debug_gfa(sg, init_ug, uopt->coverage_cut, gfa_name, uopt->sources, uopt->ruIndex, uopt->max_hang, uopt->min_ovlp, 0, 0, 1);
// free(gfa_name);
filter_sg_by_ug(sg, init_ug, uopt);
@@ -17257,8 +17257,8 @@ ul_renew_t *ropt, const char *bin_file, uint64_t free_uld, uint64_t is_bridg, ui
// print_ul_alignment(init_ug, &UL_INF, 47072, "after-2");
// exit(1);
// if(free_uld) {
print_raw_uls_seq(uidx, asm_opt.output_file_name);
print_raw_uls_aln(uidx, asm_opt.output_file_name);
// print_raw_uls_seq(uidx, asm_opt.output_file_name);
// print_raw_uls_aln(uidx, asm_opt.output_file_name);
// }
ul_re_correct(uidx, asm_opt.integer_correct_round/**3**/);
@@ -17273,9 +17273,9 @@ ul_renew_t *ropt, const char *bin_file, uint64_t free_uld, uint64_t is_bridg, ui
// free(r_het); destory_bubbles(bub); free(bub);
// if(free_uld) {
uidx->uovl.hybrid_ug = gen_hybrid_ug(uidx, uidx->uovl.h_usg);
// uidx->uovl.hybrid_ug = gen_hybrid_ug(uidx, uidx->uovl.h_usg);
// // print_debug_gfa(sg, uidx->uovl.hybrid_ug, uopt->coverage_cut, "hybrid_ug", uopt->sources, uopt->ruIndex, uopt->max_hang, uopt->min_ovlp, 0, 0, 1);
print_debug_gfa(sg, uidx->uovl.hybrid_ug, uopt->coverage_cut, "hybrid_ug", uopt->sources, uopt->ruIndex, uopt->max_hang, uopt->min_ovlp, 0, 0, 0);
// print_debug_gfa(sg, uidx->uovl.hybrid_ug, uopt->coverage_cut, "hybrid_ug", uopt->sources, uopt->ruIndex, uopt->max_hang, uopt->min_ovlp, 0, 0, 0);
// // print_debug_gfa(sg, init_ug, uopt->coverage_cut, bin_file, uopt->sources, uopt->ruIndex, uopt->max_hang, uopt->min_ovlp, 0, 0, 0);
// }
// if(is_trio) gen_ul_trio_graph(uopt, uidx, o_file);