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449 Commits 11 Branches 54 Tags
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449 Commits

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Author SHA1 Message Date
chhylp123
cb320b88f3 debug ul 2021-10-10 13:37:32 -04:00
chhylp123
7dd4a848b9 debug graph 2021-09-26 13:51:13 -04:00
chhylp123
ed814abf35 before branch 2021-09-16 17:16:30 -04:00
chhylp123
ab80851b94 mempcpy -> memcpy 0.16.1 2021-09-12 17:43:43 -04:00
chhylp123
5e84db0ec9 adjust skew weight 2021-09-10 17:18:48 -04:00
chhylp123
809ca18dda r373 2021-09-10 17:17:44 -04:00
chhylp123
17b5cb21d3 tmp macro 2021-08-30 09:30:48 -04:00
chhylp123
e230b3a55f 0.16.0 release 0.16.0 2021-08-22 21:58:00 -04:00
chhylp123
37b07e4d33 better seeding 2021-08-22 09:53:34 -04:00
chhylp123
bfff640a82 dp opt 2021-08-12 11:16:10 -04:00
chhylp123
6ea66e1290 resolve conflicts 2021-07-27 20:11:22 -04:00
chhylp123
0c81c341d5 update r351 2021-07-27 19:51:20 -04:00
chhylp123
3c8a933b8a Merge remote-tracking branch 'origin/dev-lh3' 2021-07-27 19:50:29 -04:00
chhylp123
f7c3a7c998 fix typo 0.15.5 2021-07-26 00:29:30 -04:00
chhylp123
321acb2d8a update for r350 2021-07-26 00:16:00 -04:00
chhylp123
b14f894160 seperate purgeing and hom peak 2021-07-25 11:23:06 -04:00
chhylp123
6a043540b5 update README 2021-07-22 01:16:28 -04:00
chhylp123
62b7418257 update 0.15.5 2021-07-22 00:59:52 -04:00
chhylp123
a531a4cbda debugging for huge datasets 2021-06-27 07:48:29 -04:00
chhylp123
0410662841 print misjoin debug 0.15.4 2021-06-23 09:49:44 -04:00
chhylp123
5a400af39d r342-misjoin 2021-06-19 14:09:09 -04:00
chhylp123
e3b721c29a r340 2021-06-16 16:44:08 -04:00
chhylp123
5b0a0c85ef ovlp filter 2021-06-13 17:35:09 -04:00
chhylp123
7e06dec2d0 Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 0.15.3 2021-06-09 20:11:54 -04:00
chhylp123
9dc530cbfb low hamming for sampels with low het rate 2021-06-09 20:10:50 -04:00
chhylp123
ca67e7a9b3 rollback 2021-05-31 18:16:20 -04:00
chhylp123
aa164949f2 backup phasing 2021-05-31 04:19:05 -04:00
chhylp123
e774a83be2 debug mbg 2021-05-30 09:02:25 -04:00
chhylp123
a39f01f4d8 haplotype popping 2021-05-24 19:43:50 -04:00
chhylp123
9e6dde7fb2 backpup 2021-05-22 10:48:49 -04:00
chhylp123
46c0157f79 new ovlp collect 2021-05-22 10:47:58 -04:00
chhylp123
626787ab8a complex cleaning 2021-05-20 17:03:18 -04:00
chhylp123
5c1680e998 fix missed ug when bubble popping 2021-05-19 10:16:23 -04:00
chhylp123
b12e008416 new somatic variant popping 2021-05-19 09:52:40 -04:00
chhylp123
be8e1e3117 sc debug 2021-05-17 00:12:41 -04:00
chhylp123
2bbac713ef init scaffold 2021-05-15 11:45:05 -04:00
chhylp123
4105dd360e correction 2021-05-11 13:01:06 -04:00
Heng Li
1f7d3f46c9 removed clang 2021-05-10 22:23:22 -04:00
Heng Li
d4cc3551e8 added code of conduct 2021-05-10 21:49:48 -04:00
Heng Li
8187f177ec Merge branch 'master' of github.com:chhylp123/hifiasm 2021-05-10 21:48:31 -04:00
Heng Li
c9b61dcd78 added CI 2021-05-10 21:48:18 -04:00
chhylp123
7918396d21 collect contig alignment + renew_utg bug fixed 2021-05-09 17:47:50 -04:00
chhylp123
03adce6202 k-mer idx for par 2021-05-06 21:31:40 -04:00
chhylp123
9ea4f6917f resolve centromere 2021-05-06 07:59:51 -04:00
chhylp123
24e5453781 bug fix 0.15.2 2021-05-02 14:16:36 -04:00
chhylp123
9c205c8271 resove tangle by hic 2021-04-30 22:44:48 -04:00
chhylp123
9b31d47379 exit(0) for --help 2021-04-28 23:10:51 -04:00
chhylp123
71e91f3fc2 assgin disconnected parts 2021-04-28 20:27:43 -04:00
chhylp123
2fc2268268 phasing improvement 2021-04-27 21:35:49 -04:00
chhylp123
11430d6a3b r329 2021-04-25 14:50:36 -04:00