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324 Commits 11 Branches 54 Tags
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Author SHA1 Message Date
Heng Li dcb583bd69 r328: use binomial heap for general cases 2020-11-01 22:49:06 -05:00
Heng Li 6fa4d44426 r327: choose up to 3 high-freq minimizers 2020-11-01 10:44:02 -05:00
Heng Li f02eb66e6a r326: select high-occ k-mers (experimental) 2020-10-29 22:36:54 -04:00
Heng Li f37c4e29fa a bit refactoring for the next change 2020-10-29 18:24:47 -04:00
Heng Li ef8c047559 removed unused ha_sketch 2020-10-29 11:28:43 -04:00
Heng Li eddb8173da added --min-hist-cnt for #49 2020-10-26 16:28:30 -04:00
chhylp123 b2b4624cea rerelease v0.13 v0.13 2020-10-22 14:24:59 -04:00
chhylp123 de4163e881 Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 
merge README
 2020-10-21 22:03:43 -04:00
chhylp123 53adde2b37 fix conflict 2020-10-21 22:01:07 -04:00
chhylp123 91d4915da7 release v0.13 2020-10-21 21:57:43 -04:00
chhylp123 04f94514ee fix circle 2020-10-19 19:51:17 -04:00
chhylp123 b1f844801a fix c->l bug 2020-10-19 16:39:53 -04:00
chhylp123 e5d503ea65 update polishing 2020-10-19 13:22:45 -04:00
chhylp123 9d4e3b3283 update polishing 2020-10-18 17:59:31 -04:00
chhylp123 753ea81194 reomve redundancy 2020-10-16 18:08:12 -04:00
chhylp123 89fcb35a64 for debugging 2020-10-11 14:32:33 -04:00
Heng Li 8cb131dca3 added a "Why hifiasm?" section 2020-10-05 01:01:58 -04:00
Heng Li 00128c3076 Fixed the wrong download link 2020-10-04 23:01:16 -04:00
Heng Li 519d5b1eb1 Updated the download link 2020-10-04 23:00:27 -04:00
chhylp123 7a314d1ef3 fix type in README 2020-08-27 23:57:48 -04:00
chhylp123 55f95c0191 fix typo v0.12 2020-08-26 00:25:42 -04:00
chhylp123 b629dd8556 freeze-0.12-r304 2020-08-23 23:38:04 -04:00
chhylp123 0a2559e4a0 freeze-r304 2020-08-23 23:36:45 -04:00
chhylp123 724990cbe7 freeze-r304 2020-08-23 23:34:36 -04:00
chhylp123 03cf0d475c save bfore multiple overlaps 2020-08-23 08:46:33 -04:00
chhylp123 90d3cb69b9 fix version number v0.11 2020-08-05 18:04:47 -04:00
chhylp123 927d66262b rerelase v0.11 2020-08-05 17:50:53 -04:00
chhylp123 e031c70d0f Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 2020-08-05 17:46:17 -04:00
chhylp123 a8aa37d201 fix makefile 2020-08-05 17:45:23 -04:00
Heng Li ebedae2a21 updated Makefile 2020-08-05 17:33:14 -04:00
chhylp123 320dc58127 fix bug at r_utg 2020-08-04 16:43:50 -04:00
chhylp123 ef5ba0cc2c update help/man v0.10 2020-07-31 21:32:02 -04:00
chhylp123 8bdc21799c update READMEN 2020-07-31 12:42:27 -04:00
chhylp123 7c385e219a update version number 2020-07-31 12:36:37 -04:00
chhylp123 d92f9519ae Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 2020-07-31 12:34:49 -04:00
chhylp123 6ca9d01f06 update version number 2020-07-31 12:28:30 -04:00
chhylp123 23f0a8b020 Merge pull request #23 from chhylp123/hifiasm_high_het 
Hifiasm high het
 2020-07-31 12:24:43 -04:00
chhylp123 9d659fd2e0 update v0.10 2020-07-31 12:23:25 -04:00
chhylp123 ace34ae2b8 for high-het and coverage 2020-07-28 13:07:35 -04:00
Heng Li 94008c02ac Re-release hifiasm-0.9 (r289) v0.9 2020-07-19 14:44:28 -04:00
Heng Li 1e4d67ee64 r288: reorganized command line help messages 2020-07-19 13:43:30 -04:00
Heng Li ff4ef89fe3 r287: fixed the INT32_MAX compiling error 2020-07-19 11:22:23 -04:00
chhylp123 952471657f change max coverage of pri-range 2020-07-18 17:40:58 -04:00
chhylp123 88ab801717 update HA_VERSION 2020-07-13 22:45:49 -04:00
chhylp123 a309e610ca resolve conflict 2020-07-13 22:44:40 -04:00
chhylp123 fda858f9e7 update coverage 2020-07-13 22:34:26 -04:00
chhylp123 c01b593d7c using coverage 2020-07-12 16:03:01 -04:00
chhylp123 a25c37ed89 update k-mer peaks 2020-07-07 13:20:25 -04:00
chhylp123 2e56ef7db5 apply coverage to purge_dups 2020-07-06 10:02:03 -04:00
Heng Li 309e885365 Release hifiasm-0.8 (r279) v0.8 2020-06-27 19:56:49 -04:00