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470 Commits 11 Branches 54 Tags
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470 Commits

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Author SHA1 Message Date
chhylp123
e8399b18f1 fixed duplicated chaining issue 2022-05-03 17:35:43 -04:00
chhylp123
8138941a26 new realignment 2022-05-03 00:59:24 -04:00
chhylp123
fdf24d5589 fix memory bug/logic bug 2022-05-01 00:37:32 -04:00
chhylp123
3064e1373b better uovlp saving 2022-04-22 23:10:21 -04:00
chhylp123
d862711623 update graph chain 2022-04-16 22:17:52 -04:00
chhylp123
9c79bdfe7f UL_gdp 2022-04-13 16:15:03 -04:00
chhylp123
75f8048b18 UL g-alignment-v1 2022-03-26 18:51:46 -04:00
chhylp123
95eb2de2b9 roughly right chaining 2022-03-25 00:29:58 -04:00
chhylp123
60236cd967 debug uc_block_t 2022-03-21 22:00:30 -04:00
chhylp123
d3b9de4120 new gchain 2022-03-16 01:13:27 -04:00
chhylp123
9c6a3607d1 intergration correctio 2022-03-01 20:25:53 -05:00
chhylp123
0ce5a7ba5b integration/print het sites 2022-01-17 18:29:48 -05:00
chhylp123
7af0d85258 backup 2021-12-29 21:22:43 -05:00
chhylp123
dbc72b8c2d has bug multiple threads 2021-12-28 21:48:41 -05:00
chhylp123
8a0ec3d575 change ug extraction 2021-12-12 20:59:48 -05:00
chhylp123
9ec286e64e new ul 2021-12-11 14:55:36 -05:00
chhylp123
b640289b19 better read phasing 2021-12-07 22:47:52 -05:00
chhylp123
1e2a9518e5 print dup log 2021-11-29 15:11:02 -05:00
chhylp123
763634e1a9 kpt_dup 2021-11-28 19:35:32 -05:00
chhylp123
26aacdcc2c correct gchains 2021-10-14 15:33:16 -04:00
chhylp123
908b4f3786 bug fix 2021-10-10 14:47:16 -04:00
chhylp123
cb320b88f3 debug ul 2021-10-10 13:37:32 -04:00
chhylp123
7dd4a848b9 debug graph 2021-09-26 13:51:13 -04:00
chhylp123
ed814abf35 before branch 2021-09-16 17:16:30 -04:00
chhylp123
ab80851b94 mempcpy -> memcpy 0.16.1 2021-09-12 17:43:43 -04:00
chhylp123
5e84db0ec9 adjust skew weight 2021-09-10 17:18:48 -04:00
chhylp123
809ca18dda r373 2021-09-10 17:17:44 -04:00
chhylp123
17b5cb21d3 tmp macro 2021-08-30 09:30:48 -04:00
chhylp123
e230b3a55f 0.16.0 release 0.16.0 2021-08-22 21:58:00 -04:00
chhylp123
37b07e4d33 better seeding 2021-08-22 09:53:34 -04:00
chhylp123
bfff640a82 dp opt 2021-08-12 11:16:10 -04:00
chhylp123
6ea66e1290 resolve conflicts 2021-07-27 20:11:22 -04:00
chhylp123
0c81c341d5 update r351 2021-07-27 19:51:20 -04:00
chhylp123
3c8a933b8a Merge remote-tracking branch 'origin/dev-lh3' 2021-07-27 19:50:29 -04:00
chhylp123
f7c3a7c998 fix typo 0.15.5 2021-07-26 00:29:30 -04:00
chhylp123
321acb2d8a update for r350 2021-07-26 00:16:00 -04:00
chhylp123
b14f894160 seperate purgeing and hom peak 2021-07-25 11:23:06 -04:00
chhylp123
6a043540b5 update README 2021-07-22 01:16:28 -04:00
chhylp123
62b7418257 update 0.15.5 2021-07-22 00:59:52 -04:00
chhylp123
a531a4cbda debugging for huge datasets 2021-06-27 07:48:29 -04:00
chhylp123
0410662841 print misjoin debug 0.15.4 2021-06-23 09:49:44 -04:00
chhylp123
5a400af39d r342-misjoin 2021-06-19 14:09:09 -04:00
chhylp123
e3b721c29a r340 2021-06-16 16:44:08 -04:00
chhylp123
5b0a0c85ef ovlp filter 2021-06-13 17:35:09 -04:00
chhylp123
7e06dec2d0 Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly 0.15.3 2021-06-09 20:11:54 -04:00
chhylp123
9dc530cbfb low hamming for sampels with low het rate 2021-06-09 20:10:50 -04:00
chhylp123
ca67e7a9b3 rollback 2021-05-31 18:16:20 -04:00
chhylp123
aa164949f2 backup phasing 2021-05-31 04:19:05 -04:00
chhylp123
e774a83be2 debug mbg 2021-05-30 09:02:25 -04:00
chhylp123
a39f01f4d8 haplotype popping 2021-05-24 19:43:50 -04:00