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584 Commits 11 Branches 54 Tags
f69166ee3bd5f83a23869ee486db285cf9017ba5
Commit Graph
224 Commits
Author SHA1 Message Date
chhylp123 b533067835 enable dbg-ovec 2023-03-10 23:30:24 -05:00
chhylp123 384b721d84 clean output 2023-03-10 15:46:23 -05:00
chhylp123 8b79a3f22e disable function for tangles with low-coverage ul 2023-03-10 15:34:10 -05:00
chhylp123 af4be8ca1a disable integer correction; disable contain dedup 2023-03-10 09:12:07 -05:00
chhylp123 85c643e85d clean contained read; fixed for deep_graph_clean 2023-03-07 15:28:24 -05:00
chhylp123 a0f2f70d91 better resolution for complex regions 2023-02-27 09:35:50 -05:00
chhylp123 04f660fd8c bug fixed for mask calculation 2023-02-24 00:36:52 -05:00
chhylp123 2b4b4f29e0 r525 2023-02-21 20:22:56 -05:00
chhylp123 8ea2d5a622 r523-phasing-across chains 2023-02-21 15:44:45 -05:00
chhylp123 7d5c793109 additional cluster for phasing 2023-02-20 23:38:27 -05:00
chhylp123 3abd3793fb clean graph alignment 2023-02-20 14:50:55 -05:00
chhylp123 b55e4396d2 prt_dbg_gfa -> before transitive reduction 2023-02-17 11:00:15 -05:00
chhylp123 fc598d71f6 0.18.6 -> 0.18.7 2023-02-16 12:16:24 -05:00
chhylp123 286b897881 r513 2023-02-16 00:04:06 -05:00
chhylp123 f2da12a2ad 508 —> futhur graph cleaning 2023-02-12 22:49:12 -05:00
chhylp123 1166b92eb4 r502->additional alignment 2023-01-25 09:39:41 -05:00
chhylp123 78ef43ce8e r500 2023-01-23 15:28:43 -05:00
chhylp123 db2edc0ffb fix exit(1) for bin_only 2023-01-23 15:25:01 -05:00
chhylp123 25d6857d44 r499->false duplications 2023-01-17 04:49:56 -05:00
chhylp123 2bf5119bb5 update help information 2023-01-12 01:22:34 -05:00
chhylp123 197cd4d77e 0.18.3 -> 0.18.4 2023-01-12 00:22:23 -05:00
chhylp123 7ad498f631 r495-reuse misjoin detection 2023-01-12 00:21:43 -05:00
chhylp123 0613b18af9 r493 ->HiC/UL/Trans 2023-01-11 20:38:45 -05:00
chhylp123 a674110b23 fixed het/hom node bugs 2022-12-08 03:07:14 -05:00
chhylp123 a3b72457f0 cleaner assembly graph 2022-12-06 09:52:00 -05:00
chhylp123 786f8bdff0 r465 2022-12-02 09:40:25 -05:00
chhylp123 a4d6cebc32 slightly better assembly graph 2022-11-28 14:42:48 -05:00
chhylp123 9a454576e1 fixed memory issue within gen_single_khit 2022-11-25 20:49:14 -05:00
chhylp123 6de08fd91f debug assert 2022-11-25 15:20:32 -05:00
chhylp123 fc76af1285 fixed gap filling with UL 2022-11-25 11:46:37 -05:00
chhylp123 979d83f68d 0.17.4-r455 2022-11-17 18:05:35 -05:00
chhylp123 9747c42123 r454 2022-11-17 18:02:52 -05:00
chhylp123 553a8745cc bugs for bubble/hom assembly 2022-11-17 18:01:08 -05:00
chhylp123 152bae2dfb fix utg el bug 2022-11-17 12:18:40 -05:00
chhylp123 9831afaf26 code clean 2022-11-17 09:31:56 -05:00
chhylp123 2c7b164f11 tmp cache 2022-11-10 19:37:52 -05:00
chhylp123 46acc8a2f6 version with wrong realignment 2022-11-07 02:35:26 -05:00
chhylp123 612c1ab712 cuttoff before debugging 2022-11-05 09:03:23 -04:00
chhylp123 e66c003b65 cleaner graph 2022-11-01 21:44:13 -04:00
chhylp123 f4b6223fde cutoff-r426-avoid-tip 2022-10-31 15:18:52 -04:00
chhylp123 2443e63ef5 done chaining 2022-10-08 14:51:03 -04:00
chhylp123 5da05f308f extend ed alignment 2022-09-13 17:29:27 -04:00
chhylp123 8b7ca5f0c3 revised HiFi phasing 2022-08-23 10:36:35 -04:00
chhylp123 54465dd9ac tangle resolved 2022-08-16 23:35:56 -04:00
chhylp123 89e0d1aafa UL graph with graph cleaning 2022-08-02 15:48:16 -04:00
chhylp123 91de382bde before contain keeping 2022-07-27 10:41:57 -04:00
chhylp123 138610b049 ul coordinates fixed 2022-06-25 21:52:56 -04:00
chhylp123 0a8c064734 read alignment extension debugging 2022-06-24 18:07:15 -04:00
chhylp123 a82e05c9f2 fix gap alignment extention 2022-06-23 22:11:28 -04:00
chhylp123 8f1c59a5da all alignments have done/been improved 2022-05-16 20:58:29 -04:00