24 Commits

Author	SHA1	Message	Date
chhylp123	0613b18af9	r493 ->HiC/UL/Trans	2023-01-11 20:38:45 -05:00
chhylp123	9c79bdfe7f	UL_gdp	2022-04-13 16:15:03 -04:00
chhylp123	0ce5a7ba5b	integration/print het sites	2022-01-17 18:29:48 -05:00
chhylp123	ab80851b94	mempcpy -> memcpy	2021-09-12 17:43:43 -04:00
chhylp123	809ca18dda	r373	2021-09-10 17:17:44 -04:00
chhylp123	17b5cb21d3	tmp macro	2021-08-30 09:30:48 -04:00
chhylp123	37b07e4d33	better seeding	2021-08-22 09:53:34 -04:00
chhylp123	bfff640a82	dp opt	2021-08-12 11:16:10 -04:00
chhylp123	6ea66e1290	resolve conflicts	2021-07-27 20:11:22 -04:00
Heng Li	205eadf346	r334: ignore a high-occ seed in a small window	2021-01-23 16:25:52 -05:00
Heng Li	da672118e5	r330: unimap heuristic for mz sampling	2021-01-21 11:05:37 -05:00
Heng Li	02f0b5dd22	r329: a bit code cleanup	2020-11-03 00:44:15 -05:00
Heng Li	dcb583bd69	r328: use binomial heap for general cases	2020-11-01 22:49:06 -05:00
Heng Li	6fa4d44426	r327: choose up to 3 high-freq minimizers	2020-11-01 10:44:02 -05:00
Heng Li	f02eb66e6a	r326: select high-occ k-mers (experimental)	2020-10-29 22:36:54 -04:00
Heng Li	f37c4e29fa	a bit refactoring for the next change	2020-10-29 18:24:47 -04:00
Heng Li	ef8c047559	removed unused ha_sketch	2020-10-29 11:28:43 -04:00
chhylp123	e5d503ea65	update polishing	2020-10-19 13:22:45 -04:00
chhylp123	89fcb35a64	for debugging	2020-10-11 14:32:33 -04:00
chhylp123	03cf0d475c	save bfore multiple overlaps	2020-08-23 08:46:33 -04:00
Heng Li	716713685c	renamed files for code cleanup	2020-03-25 19:59:17 -04:00
Heng Li	585bbbe213	a bit code cleanup	2020-03-25 10:31:38 -04:00
Heng Li	84361ba6dd	dense minimizer apparently works	2020-03-24 23:05:38 -04:00
Heng Li	3341cf20ba	backup	2020-03-24 21:57:23 -04:00