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Haoyu Cheng 3c0c201cdf improve speed
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.vscode
improve speed
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Assembly.cpp
improve speed
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Assembly.h
Merge overlap
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CommandLines.cpp
improve speed
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CommandLines.h
S/L index&reads
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Correct.cpp
improve speed
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Correct.h
improve speed
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edlib.cpp
edit distance based error correction
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edlib.h
edit distance based error correction
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Hash_Table.cpp
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Hash_Table.h
improve speed
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ketopt.h
Using klib
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khash.h
S/L index&reads
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kmer.cpp
Reduce memory requirement
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kmer.h
Merge overlap
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kseq.h
Update position hash table
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Levenshtein_distance.cpp
prefilter
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Levenshtein_distance.h
resure alignment
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LICENSE
Initial commit
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main.cpp
improve speed
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Makefile
full error correction
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Output.cpp
full error correction
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Output.h
full error correction
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POA.cpp
improve speed
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POA.h
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Process_Read.cpp
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Process_Read.h
improve speed
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README.md
test README
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README.md

Long_read_assembly

##test

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Description
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
bioinformaticsdenovo-assemblygenomicshifi-readpacbio
Readme MIT 21 MiB
Languages
C++ 93.2%
C 6.5%
Roff 0.2%