mirror of
https://github.com/chhylp123/hifiasm.git
synced 2026-09-15 12:47:57 +08:00
54 lines
1.9 KiB
Makefile
54 lines
1.9 KiB
Makefile
CXX= g++
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CXXFLAGS= -g -O3 -msse4.2 -mpopcnt -fomit-frame-pointer -Wall #-Winline
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CPPFLAGS=
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INCLUDES=
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OBJS= Output.o CommandLines.o Process_Read.o Assembly.o kmer.o Hash_Table.o \
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POA.o Correct.o Levenshtein_distance.o Overlaps.o #ksw2_extz2_sse.o
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EXE= hifiasm
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LIBS= -lz -lpthread -lm
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ifneq ($(asan),)
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CXXFLAGS+=-fsanitize=address
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LIBS+=-fsanitize=address
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endif
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.SUFFIXES:.cpp .o
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.PHONY:all clean depend
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.cpp.o:
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$(CXX) -c $(CXXFLAGS) $(CPPFLAGS) $(INCLUDES) $< -o $@
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all:$(EXE)
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$(EXE):$(OBJS) main.o
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$(CXX) $(CXXFLAGS) $^ -o $@ $(LIBS)
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clean:
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rm -fr gmon.out *.o a.out $(EXE) *~ *.a *.dSYM
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depend:
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(LC_ALL=C; export LC_ALL; makedepend -Y -- $(CPPFLAGS) $(DFLAGS) -- *.cpp)
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# DO NOT DELETE
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Assembly.o: Assembly.h Process_Read.h kseq.h Overlaps.h kvec.h kdq.h
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Assembly.o: CommandLines.h kmer.h Hash_Table.h khash.h POA.h Correct.h
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Assembly.o: Levenshtein_distance.h Output.h
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CommandLines.o: CommandLines.h ketopt.h
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Correct.o: Correct.h Hash_Table.h khash.h kmer.h Process_Read.h kseq.h
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Correct.o: Overlaps.h kvec.h kdq.h CommandLines.h Levenshtein_distance.h
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Correct.o: POA.h Assembly.h #ksw2.h
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Hash_Table.o: Hash_Table.h khash.h kmer.h Process_Read.h kseq.h Overlaps.h
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Hash_Table.o: kvec.h kdq.h CommandLines.h Correct.h Levenshtein_distance.h
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Hash_Table.o: POA.h ksort.h
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Levenshtein_distance.o: Levenshtein_distance.h
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Output.o: Output.h CommandLines.h
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Overlaps.o: Overlaps.h kvec.h kdq.h ksort.h Process_Read.h kseq.h
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Overlaps.o: CommandLines.h
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POA.o: POA.h Hash_Table.h khash.h kmer.h Process_Read.h kseq.h Overlaps.h
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POA.o: kvec.h kdq.h CommandLines.h Correct.h Levenshtein_distance.h
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Process_Read.o: Process_Read.h kseq.h Overlaps.h kvec.h kdq.h CommandLines.h
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kmer.o: kmer.h Process_Read.h kseq.h Overlaps.h kvec.h kdq.h CommandLines.h
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main.o: CommandLines.h Process_Read.h kseq.h Overlaps.h kvec.h kdq.h
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main.o: Assembly.h Levenshtein_distance.h
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#ksw2_extz2_sse.o: ksw2.h
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