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Haoyu Cheng 4ac9907e49 clean code
2019-12-26 02:26:24 -05:00
.vscode
final DP-based assembly
2019-11-13 20:18:11 -05:00
Assembly.cpp
clean code
2019-12-26 02:26:24 -05:00
Assembly.h
clean code
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CommandLines.cpp
clean code
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CommandLines.h
clean code
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Correct.cpp
clean code
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Correct.h
clean code
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Hash_Table.cpp
clean code
2019-12-26 02:26:24 -05:00
Hash_Table.h
clean code
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kdq.h
final DP-based assembly
2019-11-13 20:18:11 -05:00
ketopt.h
Using klib
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khash.h
clean code
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kmer.cpp
final DP-based assembly
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kmer.h
clean code
2019-12-26 02:26:24 -05:00
kseq.h
added klib_unused to suppress kseq warnings
2019-11-22 14:47:54 -05:00
ksort.h
final DP-based assembly
2019-11-13 20:18:11 -05:00
kvec.h
final DP-based assembly
2019-11-13 20:18:11 -05:00
Levenshtein_distance.cpp
clean code
2019-12-26 02:26:24 -05:00
Levenshtein_distance.h
clean code
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LICENSE
Initial commit
2019-05-09 15:34:58 -04:00
main.cpp
clean code
2019-12-26 02:26:24 -05:00
Makefile
clean code
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Output.cpp
clean code
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Output.h
full error correction
2019-07-14 21:13:50 -04:00
Overlaps.cpp
clean code
2019-12-26 02:26:24 -05:00
Overlaps.h
clean code
2019-12-26 02:26:24 -05:00
POA.cpp
clean code
2019-12-26 02:26:24 -05:00
POA.h
clean code
2019-12-26 02:26:24 -05:00
Process_Read.cpp
clean code
2019-12-26 02:26:24 -05:00
Process_Read.h
clean code
2019-12-26 02:26:24 -05:00
README.md
test README
2019-05-09 16:05:32 -04:00
sort_fasta.sh
phasing
2019-09-02 10:30:14 -04:00

README.md

Long_read_assembly

##test

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Description
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
bioinformaticsdenovo-assemblygenomicshifi-readpacbio
Readme MIT 21 MiB
Languages
C++ 93.2%
C 6.5%
Roff 0.2%