xxay/hifiasm

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Haoyu Cheng d6c6a1fa11 DP

2019-09-07 21:25:11 -04:00

DP

2019-09-07 21:25:11 -04:00

Assembly.cpp

2019_9_5

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Assembly.h

phasing

2019-09-02 10:30:14 -04:00

CommandLines.cpp

phasing

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CommandLines.h

phasing

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Correct.cpp

DP

2019-09-07 21:25:11 -04:00

Correct.h

DP

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debug_assembly.sh

phasing

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edlib.cpp

edit distance based error correction

2019-07-07 03:44:59 -04:00

edlib.h

edit distance based error correction

2019-07-07 03:44:59 -04:00

Hash_Table.cpp

phasing

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Hash_Table.h

2019_9_5

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ketopt.h

Using klib

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khash.h

S/L index&reads

2019-05-16 21:14:50 -04:00

kmer.cpp

Reduce memory requirement

2019-05-16 00:22:20 -04:00

kmer.h

Merge overlap

2019-05-18 01:03:24 -04:00

kseq.h

Update position hash table

2019-05-14 17:02:03 -04:00

Levenshtein_distance.cpp

prefilter

2019-07-08 01:06:36 -04:00

Levenshtein_distance.h

resure alignment

2019-07-12 10:18:25 -04:00

LICENSE

Initial commit

2019-05-09 15:34:58 -04:00

main.cpp

phasing

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Makefile

full error correction

2019-07-14 21:13:50 -04:00

Output.cpp

full error correction

2019-07-14 21:13:50 -04:00

Output.h

full error correction

2019-07-14 21:13:50 -04:00

POA.cpp

phasing

2019-09-02 10:30:14 -04:00

POA.h

improve speed

2019-08-26 02:22:20 -04:00

Process_Read.cpp

2019_9_5

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Process_Read.h

2019_9_5

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README.md

test README

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sort_fasta.sh

phasing

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README.md

Long_read_assembly

##test