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39 lines
889 B
C
39 lines
889 B
C
#ifndef __COMMAND_LINE_PARSER__
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#define __COMMAND_LINE_PARSER__
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#include <pthread.h>
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#define VERBOSE 0
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typedef struct {
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char* read_file_name;
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char* output_file_name;
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char* required_read_name;
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int thread_num;
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int k_mer_length;
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int k_mer_min_freq;
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int k_mer_max_freq;
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int load_index_from_disk;
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int write_index_to_disk;
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int number_of_round;
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int adapterLen;
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int clean_round;
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int complete_threads;
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int roundID;
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float min_drop_rate;
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float max_drop_rate;
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long long pop_bubble_size;
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long long num_bases;
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long long num_corrected_bases;
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long long num_recorrected_bases;
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} hifiasm_opt_t;
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extern hifiasm_opt_t asm_opt;
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void init_opt(hifiasm_opt_t* asm_opt);
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void clear_opt(hifiasm_opt_t* asm_opt, int last_round);
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int CommandLine_process (int argc, char *argv[], hifiasm_opt_t* asm_opt);
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double Get_T(void);
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#endif |