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Alokito
2019-09-04 15:45:56 -04:00
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commit 33985614d3
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Readme.md
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@@ -10,24 +10,24 @@ Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zu
1. Set up a venv with
```
python -m venv .cellxgene-gateway
source .cellxgene-gateway/bin/activate
python -m venv .cellxgene-gateway
source .cellxgene-gateway/bin/activate
```
2. Install requirements with
```
pip install -r requirements.txt
pip install -r requirements.txt
```
3. Prepare a folder with .h5ad files, for example
```
mkdir cellxgene_data
wget https://github.com/chanzuckerberg/cellxgene/raw/master/example-dataset/pbmc3k.h5ad -O ../cellxgene_data/pbmc3k.h5ad
mkdir cellxgene_data
wget https://github.com/chanzuckerberg/cellxgene/raw/master/example-dataset/pbmc3k.h5ad -O ../cellxgene_data/pbmc3k.h5ad
```
4. Copy run.sh.example to run.sh:
```
cp run.sh.example run.sh
cp run.sh.example run.sh
```
`run.sh` defines various environment variables: