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Update compatibility test (#2009)
Add comment in requirements about h5py and anndata. #1963
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2
.github/workflows/compatibility_tests.yml
vendored
2
.github/workflows/compatibility_tests.yml
vendored
@@ -29,7 +29,7 @@ jobs:
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strategy:
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matrix:
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python-version: [3.6, 3.7] # As of Oct 2020 Anndata is not compatible with 3.8
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anndata-version: [0.7.0, 0.7.1, 0.7.2, 0.7.3, 0.7.4]
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anndata-version: [0.7.0, 0.7.1, 0.7.2, 0.7.3, 0.7.4, 0.7.5]
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test-suite: [smoke-test, smoke-test-annotations]
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steps:
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- uses: actions/checkout@v2
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@@ -12,7 +12,7 @@ flatbuffers>=1.11.0
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flatten-dict>=0.2.0
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fsspec>=0.4.4,<0.8.0
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gunicorn>=20.0.4
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h5py<3.0.0 # h5py returns bytes instead of str, which breaks many assumptions
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h5py<3.0.0 # h5py>=3.0.0 had a breaking change; there is a fix in anndata>=0.7.5
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numba>=0.49.1
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numpy>=1.15.0
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packaging>=20.0
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