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Update compatibility test (#2009)

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Add comment in requirements about h5py and anndata.

  #1963
This commit is contained in:
bmccandless
2020-12-21 14:38:07 -06:00
committed by GitHub
parent f07e174a06
commit 7599af252d
2 changed files with 2 additions and 2 deletions
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.github/workflows/compatibility_tests.yml
+1 -1
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@@ -29,7 +29,7 @@ jobs:
strategy: strategy:
matrix: matrix:
python-version: [3.6, 3.7] # As of Oct 2020 Anndata is not compatible with 3.8 python-version: [3.6, 3.7] # As of Oct 2020 Anndata is not compatible with 3.8
anndata-version: [0.7.0, 0.7.1, 0.7.2, 0.7.3, 0.7.4] anndata-version: [0.7.0, 0.7.1, 0.7.2, 0.7.3, 0.7.4, 0.7.5]
test-suite: [smoke-test, smoke-test-annotations] test-suite: [smoke-test, smoke-test-annotations]
steps: steps:
- uses: actions/checkout@v2 - uses: actions/checkout@v2
server/requirements.txt
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@@ -12,7 +12,7 @@ flatbuffers>=1.11.0
flatten-dict>=0.2.0 flatten-dict>=0.2.0
fsspec>=0.4.4,<0.8.0 fsspec>=0.4.4,<0.8.0
gunicorn>=20.0.4 gunicorn>=20.0.4
h5py<3.0.0 # h5py returns bytes instead of str, which breaks many assumptions h5py<3.0.0 # h5py>=3.0.0 had a breaking change; there is a fix in anndata>=0.7.5
numba>=0.49.1 numba>=0.49.1
numpy>=1.15.0 numpy>=1.15.0
packaging>=20.0 packaging>=20.0