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improve error message for OBO parse failure (#2053)

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Bruce Martin
2021-02-05 12:19:40 -08:00
committed by GitHub
parent 3aef21f76c
commit e6281baa39
1 changed files with 2 additions and 2 deletions
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4
server/common/annotations/annotations.py
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@@ -33,10 +33,10 @@ class Annotations(metaclass=ABCMeta):
raise OntologyLoadFailure("Unable to find OBO ontology path") from e
except SyntaxError as e:
raise OntologyLoadFailure("Syntax error loading OBO ontology") from e
raise OntologyLoadFailure(f"{path}:{e.lineno}:{e.offset} OBO syntax error, unable to read ontology") from e
except Exception as e:
raise OntologyLoadFailure("Error loading OBO file") from e
raise OntologyLoadFailure(f"{path}:Error loading OBO file") from e
def get_schema(self, data_adaptor):
schema = []