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4 Commits

Author SHA1 Message Date
Andrew Tolopko
ddb601c103 feat: annotate command improvements (#2568) 
* Replace --input-h5ad-file with a positional argument, for consistency with other CLI commands
* Replace --update-h5ad-file with --overwrite, for consistency with `prepare` command.
* Fix/clarify various help descriptions
* Fix final output message when input file is overwritten
* Fix annotate top-level help description
 2022-09-15 11:55:58 -04:00
Andrew Tolopko
a9ef01a6f9 fix test (#2549) 
address issues building mlflow model in GHA test env
 2022-07-29 11:17:04 -04:00
Andrew Tolopko
03d9e8e6aa fix unit test 
avoid performing pip installs for mlflow-based tests
 2022-07-29 09:57:55 -04:00
Andrew Tolopko
30e19e47c6 feat: add cli annotation subcommand (#2539) 
add `cellxgene annotate` subcommand for invoking MLflow model to generate new `obs` annotations, initially intended for cell type annotations.
 2022-07-29 05:15:54 -07:00