maniarathi
17e0cbeec9
Bump
2020-10-06 13:56:27 -07:00
maniarathi
1a6f89f01a
Bump version: 0.16.5-rc.0 → 0.16.5-rc.1
2020-10-06 13:55:35 -07:00
maniarathi
e4b47fc0d3
Merge remote-tracking branch 'origin/main' into release-version-0.16.5
2020-10-06 13:25:53 -07:00
maniarathi
b048fd8d9a
Allow columns encoded in float64 to be rendered as part of continuous value histograms. ( #1905 )
2020-10-06 12:59:07 -07:00
maniarathi
e8b35a36fd
Merge remote-tracking branch 'origin/main' into release-version-0.16.5
2020-10-05 10:34:10 -07:00
Timmy Huang
8bd4cbd1e5
1807-authN-smoke-test ( #1898 )
...
This PR does the following:
1. Add `login` and `logout` helper functions in `client/__tests__/e2e/cellxgeneActions.js`
2. Add conditional AuthN integration test in `client/__tests__/e2e/e2e.test.js`. The test will only run if env variable `TEST_AUTH_INTEGRATION` is `"true"`, which is only set in `single-cell-infra`'s Github Action flow. Corresponding PR [here](https://github.com/chanzuckerberg/single-cell-infra/pull/198 )
2020-10-01 12:29:59 -07:00
dependabot[bot] and Severiano Badajoz
e6c996ca93
Bump bl from 4.0.2 to 4.0.3 in /client ( #1810 )
...
Bumps [bl](https://github.com/rvagg/bl ) from 4.0.2 to 4.0.3.
- [Release notes](https://github.com/rvagg/bl/releases )
- [Commits](https://github.com/rvagg/bl/compare/v4.0.2...v4.0.3 )
Signed-off-by: dependabot[bot] <support@github.com >
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com >
2020-09-30 15:24:51 -07:00
Timmy Huang
99152dd5aa
add-menu-test-id ( #1895 )
2020-09-30 12:53:51 -07:00
Colin Megill
04a3c3c6b6
Partial fix for 1830 ( #1863 )
...
* Remove door icon from log in button
* Move log in and info buttons from the top bar to in line with the cellxgene icon and dataset name
* Hover over on login button should say "Log in to cellxgene"
* Show email
closes #1830
2020-09-30 11:45:10 -07:00
maniarathi
4aabb8e092
Make sure there are more than 1 values in a category before rendering it ( #1871 )
2020-09-29 15:32:21 -07:00
Severiano Badajoz and czimergebot
7bee09cd16
Add blueprint eslint plugin ( #1892 )
...
* add bp3 eslint plugin
* first eslint runthrough + manual changes
* small fixes
* update snapshots
* update h1 to h4
Co-authored-by: czimergebot <35308261+czimergebot@users.noreply.github.com >
2020-09-29 15:00:56 -07:00
Severiano Badajoz
21dfdb91a9
skip user annos when building dataset metadata ( #1881 )
2020-09-28 13:17:14 -07:00
Severiano Badajoz
374bb11279
Handle case where new drag starts while existing lasso is not finished ( #1864 )
...
* handle case where new drag starts while existing lasso is not finished
* flip variable
2020-09-28 10:34:47 -07:00
maniarathi
b37dafa99b
Bump
2020-09-21 18:00:07 -07:00
maniarathi
f046e8e382
Bump version: 0.16.4-rc.0 → 0.16.5-rc.0
2020-09-21 15:49:24 -07:00
maniarathi
684a61c409
Bump version: 0.16.3-rc.0 → 0.16.4-rc.0
2020-09-21 15:22:39 -07:00
maniarathi
5a68aac8ac
Bump version: 0.16.2-rc.0 → 0.16.3-rc.0
2020-09-21 15:09:22 -07:00
maniarathi
dbe6ce4b37
Bump version: 0.16.1-rc.1 → 0.16.2-rc.0
2020-09-21 14:56:53 -07:00
maniarathi
c2e71da0ae
Bump version: 0.16.1-rc.0 → 0.16.1-rc.1
2020-09-21 12:00:48 -07:00
maniarathi
42b2805654
Add package-lock file
2020-09-21 11:21:22 -07:00
maniarathi
279d1be283
Bump version: 0.16.0 → 0.16.1-rc.0
2020-09-21 11:19:52 -07:00
Severiano Badajoz
210042814f
Info Drawer format adjustments ( #1853 )
...
This PR tweaks the look and feel of the info drawer in response to QA from @signechambers1
2020-09-18 13:16:28 -07:00
Severiano Badajoz
3e9cb0265e
Fix InfoFormat parameter checking ( #1831 )
...
Went through and ensured that undefined/null values were caught and handled correctly in render functions. Also documented some of the more complicated functions.
---
Closes #1825
2020-09-15 12:03:59 -07:00
maniarathi
4b240920e2
Pass in the previous crossfilter when creating a new annomatrix for a switched embedding in order to retain the previous selection of cells. ( #1832 )
...
* Pass in the previous crossfilter when creating a new annomatrix for a switched embedding in order to retain the previous selection of cells.
* Address Bruce's PR comment
2020-09-12 10:32:00 -07:00
Severiano Badajoz
5583e91392
Pull config values into dataset overview drawer ( #1814 )
...
This PR adds multiple data to the dataset overview drawer provided by the config endpoint and formats them accordingly. The appearance of this new data is contingent on `dataPortalProps.corpora_schema_version === "1.0.0"`
For QA launch cellxgene with a remixed dataset and click on the button in the upper left-hand corner or the updated button in the info menu.
~~Review opening is blocked by merge of #1805~~
---
Closes #1319
2020-09-10 16:41:05 -07:00
Severiano Badajoz
89b68723cc
Create dataset info drawer ( #1805 )
...
* create infoDrawer
* create read/writes to redux store
* reimplement reducer that vanished
* remove aboutURL stuff from title
* add formatting and style
* s/length/size and make metadata items list items
* remove comment
* remove empty singletons
* refactor into async react component
* Clean up skeleton
* swap out for loop for map
* add comment
* replace placeholder
* switch ternary for `&&`
* event handling fixes and PR feedback
* add button and move click handler to button
* ditch empty categories
* move drawer button handling to redux
* remove categorical move note
* PR feedback from colin
* update snapshot
* remove hover state
2020-09-09 17:55:43 -07:00
Severiano Badajoz
437fd5feda
Correctly check if mini histograms shouldn't be rendered ( #1809 )
...
* ensure that function returns a boolean value
* change function used to check if mini histogram should not render
2020-09-01 16:45:50 -07:00
bmccandless
f8cdb12892
Fix frontend mishandling of null userinfo ( #1795 )
...
* Fix frontend mishandling of null userinfo
If the authentication is disabled, the userinfo endpoint returns null.
This case needs to be handled.
#1780
* Small fix for handling refesh tokens in auth
2020-08-26 13:01:50 -07:00
Severiano Badajoz
0a10b3ec2a
sort object keys to our specification before generating user colormap ( #1792 )
2020-08-25 12:25:55 -07:00
Timmy Huang
9a40b28172
thuang-fix-static-asset-font ( #1791 )
...
This seems to fix the font URL path, at least locally for both `:3000` and `:5005`
<img width="1296" alt="Screen Shot 2020-08-24 at 4 01 07 PM" src="https://user-images.githubusercontent.com/6309723/91106044-8a338780-e626-11ea-885f-e5c268f3ecf0.png ">
<img width="1377" alt="Screen Shot 2020-08-24 at 4 01 28 PM" src="https://user-images.githubusercontent.com/6309723/91106047-8dc70e80-e626-11ea-95b0-62e47cc6303f.png ">
2020-08-24 17:05:46 -07:00
65ea1b673f
Dunitz 1685 hosted annotations ( #1789 )
...
* save tiledb array to s3, dont cache user annotations
* Add option to disable annotation filename prompt (#1787 )
Co-authored-by: Madison Dunitz <dunitzm@gmail.com >
* set tiledb default context in cxg_adaptor
Co-authored-by: maniarathi <arathi.mani@chanzuckerberg.com >
Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com >
2020-08-24 18:26:08 -05:00
maniarathi
5dfe0043c3
Serves static assets from each dataset root URL and switch the publicPath to be a relative path. ( #1786 )
2020-08-22 10:04:40 -07:00
Snyk bot
fae9ac9382
Upgrade lodash from 4.17.15 to 4.17.20 ( #1759 )
...
<h3>Snyk has created this PR to fix one or more vulnerable packages in the `npm` dependencies of this project.</h3>
#### Changes included in this PR
- Changes to the following files to upgrade the vulnerable dependencies to a fixed version:
- client/package.json
- client/package-lock.json
#### Vulnerabilities that will be fixed
##### With an upgrade:
Severity | Priority Score (*) | Issue | Breaking Change | Exploit Maturity
:-------------------------:|-------------------------|:-------------------------|:-------------------------|:-------------------------
 | **776/1000** <br/> **Why?** Recently disclosed, Has a fix available, CVSS 9.8 | Prototype Pollution <br/>[SNYK-JS-LODASH-590103](https://snyk.io/vuln/SNYK-JS-LODASH-590103 ) | No | No Known Exploit
(*) Note that the real score may have changed since the PR was raised.
Check the changes in this PR to ensure they won't cause issues with your project.
------------
**Note:** *You are seeing this because you or someone else with access to this repository has authorized Snyk to open fix PRs.*
For more information: <img src="https://api.segment.io/v1/pixel/track?data=eyJ3cml0ZUtleSI6InJyWmxZcEdHY2RyTHZsb0lYd0dUcVg4WkFRTnNCOUEwIiwiYW5vbnltb3VzSWQiOiIzMTg0Mjc0Ny03NTJmLTQyZTctYjFmMi04ZmEzZjUxZDBlMjEiLCJldmVudCI6IlBSIHZpZXdlZCIsInByb3BlcnRpZXMiOnsicHJJZCI6IjMxODQyNzQ3LTc1MmYtNDJlNy1iMWYyLThmYTNmNTFkMGUyMSJ9fQ== " width="0" height="0"/>
🧐 [View latest project report](https://app.snyk.io/org/cellxgene/project/9195ddb9-6feb-469e-ad47-f5dc24c811fe )
🛠 [Adjust project settings](https://app.snyk.io/org/cellxgene/project/9195ddb9-6feb-469e-ad47-f5dc24c811fe/settings )
📚 [Read more about Snyk's upgrade and patch logic](https://support.snyk.io/hc/en-us/articles/360003891078-Snyk-patches-to-fix-vulnerabilities )
[//]: # (snyk:metadata:{"prId":"31842747-752f-42e7-b1f2-8fa3f51d0e21","dependencies":[{"name":"lodash","from":"4.17.15","to":"4.17.20"}],"packageManager":"npm","projectPublicId":"9195ddb9-6feb-469e-ad47-f5dc24c811fe","projectUrl":"https://app.snyk.io/org/cellxgene/project/9195ddb9-6feb-469e-ad47-f5dc24c811fe?utm_source=github&utm_medium=fix-pr ","type":"auto","patch":[],"vulns":["SNYK-JS-LODASH-590103"],"upgrade":["SNYK-JS-LODASH-590103"],"isBreakingChange":false,"env":"prod","prType":"fix","templateVariants":["updated-fix-title","priorityScore","merge-advice-badge-shown"],"priorityScoreList":[776]})
2020-08-20 11:03:30 -07:00
Severiano Badajoz
1acb8e4a6f
Remove support for non-chromium Edge ( #1761 )
...
* bump browserlist Edge to 79+
* bump edge version on unsupported browser page
2020-08-17 16:51:58 -07:00
bmccandless and Colin Megill
298924fef5
Separate userinfo from the config endpoint ( #1728 )
...
* Separate userinfo from the config endpoint
previously information about if the user was logged in and their username
was part of the config endpoint.
However, the config endpoint was previously static, and has a cache control.
Rather than not caching the config, a new endpoint called "userinfo"
is created to handle that information.
The config endpoint still has the non-changing part of the authentication:
config:
authentication:
requires_client_login: True/False
login: <uri to login endoint if requires_client_login is True>
logout: <uri to logout endoint if requires_client_login is True>
The userinfo endpoint returns this information:
userinfo:
is_authenticated: True/False
username: <string if is_authenticated>
if authentication is not enabled then the config does not have an authentication key,
and userinfo returns None.
Also in the PR are a few minor code improvements and bug fixes
Co-authored-by: Colin Megill <colinmegill@gmail.com >
2020-08-17 13:41:03 -07:00
Colin Megill
4ad9f5875a
xx, yy ( #1754 )
2020-08-17 11:55:49 -04:00
maniarathi
263e893b30
Revert "Patching ( #1744 )" ( #1748 )
...
This reverts commit 6848f7a8b2
2020-08-14 11:22:39 -07:00
maniarathi
6848f7a8b2
Patching ( #1744 )
2020-08-13 14:36:42 -07:00
Severiano Badajoz
518768e8f8
change asset src's to S3 links ( #1734 )
...
* add disclaimer about changing the script
* add hash for obsolete browser script
* add explicit domain img-src
* add single quotes
* add quotes to `data:`
* change order and remove single quotes
* lint, remove extra slash, and make hash an array
* add links to S3
2020-08-12 10:38:49 -07:00
maniarathi
44c738e2f4
Bumping version of cellxgene for desktop release ( #1733 )
2020-08-12 09:58:52 -07:00
Severiano Badajoz
f221856ae1
add CSP sources for obsolete browser prompt ( #1731 )
...
Adds script hash and explicit domain to `img-src` directive
2020-08-11 16:50:46 -07:00
maniarathi
49b89ba7af
Swap using href to using origin+pathname to avoid errors with including any query parameters from being passed in. ( #1722 )
2020-08-07 10:02:22 -07:00
Severiano Badajoz
018daacdbb
create truncation edge case snapshot tests ( #1695 )
2020-08-07 09:54:01 -07:00
Colin Megill
c913935d90
Login / Logout button ( #1718 )
...
* first pass auth button
* only pop anno dialogue if authenticated
* add config to ignore
* remove config
2020-08-06 14:39:58 -04:00
Severiano Badajoz
8d96477fae
Remove hash source from CSP style-src directive ( #1717 )
...
* remove style csp hash generation + lint
* remove references to style_hashes
2020-08-05 16:43:35 -07:00
Severiano Badajoz
b18f96da77
check for bins change for canvas draw ( #1693 )
...
* check for bins change for canvas draw
* PR feedback
2020-08-05 15:20:03 -07:00
maniarathi
cdae4f9f10
Reorganize the server testing directory ( #1705 )
2020-08-05 08:31:02 -07:00
8bbc183647
Explicit Browser Support ( #1682 )
...
* add FastestSmallestTextEncoderDecoder polyfill
* remove nomodule from script import
* add browserslist
* add obsolete-webpack-plugin
* switch out modern-browser for preset-env
* add prompt on non target browser
* propagate prod changes to dev
* add core-js-3 and TextEncoder TextDecoder (#1671 )
* add script to remove react, style html
* propagate changes to prod
* add script-ext-html-webpack-plugin for async
* more styling
* add eslint-plugin-compat
* extend compat plugin
* add existing polyfills
* add github fetch polyfill
* add AbortController polyfill
* change promptOnNonTargetBrowser to false
* propagate
* add browser links
* prettier
* add browser support to readme
* move polyfills to webpack
* remove CDN encoder polyfill
* Add no Explorer support
* fix incorrect package name
* propagate changes
* Update README.md
Co-authored-by: Ambrose J Carr <ambrosejcarr@users.noreply.github.com >
* add new deps
* create shared config
* swap out html-loader for filestream
* sanitize template
Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com >
Co-authored-by: Ambrose J Carr <ambrosejcarr@users.noreply.github.com >
2020-08-03 12:50:09 -07:00
dependabot[bot]
bb2326525e
Bump elliptic from 6.5.2 to 6.5.3 in /client ( #1697 )
...
Bumps [elliptic](https://github.com/indutny/elliptic ) from 6.5.2 to 6.5.3.
- [Release notes](https://github.com/indutny/elliptic/releases )
- [Commits](https://github.com/indutny/elliptic/compare/v6.5.2...v6.5.3 )
Signed-off-by: dependabot[bot] <support@github.com >
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2020-07-31 13:54:56 -04:00
Bruce Martin
f2fbeff511
add support for corpora default_embedding field ( #1696 )
...
* fix mispelling
* re-implement re-embedding
* always load base embedding to fetch counts
* format
* lint
* fix tests
* lint
* fix accept handling
* test log
* more debug
* more
* more
* more
* more
* remove logging
* logging
* jsonify
* remove debugging logs
* lint
* clean up errors a bit
* fix issue found in PR review
* add support for corpora default_embedding
* fix botched merge
* PR review
* PR review
2020-07-31 07:36:48 -07:00
maniarathi
