Madison Dunitz
4666f1f044
add rule for static assest without dataset id ( #2194 )
2021-05-07 21:17:31 -07:00
Madison Dunitz
63cf82c60e
Dunitz/scale test update ( #2159 )
2021-04-18 13:33:04 -05:00
Madison Dunitz
ae23c9e5b9
white space change to run tests ( #2132 )
...
* update tiledb reqs
2021-03-30 14:34:39 -05:00
Madison Dunitz
78c9d24ed4
Refactor czi_hosted and server into backend directory, pull common code into backend/common, refactor tests ( #2102 )
...
* move local_server -> backend/server server-> backend/czi_hosted, pull common code into backend/common update imports, tests and make commands
2021-03-26 00:27:07 -05:00
Madison Dunitz
920d71e6b7
pin numba req ( #2110 )
...
* pin numba req
* make req more flexible
2021-03-16 11:45:27 -05:00
Madison Dunitz
3b6c46ba86
Fix dependency issues in compatibility tests ( #1951 )
...
* update reqs
* pin scanpy
* merge in fix for race conditions
2020-10-30 10:47:12 -05:00
Madison Dunitz
946a910ef4
Fix compatibility test ( #1948 )
...
* update anndata version and warning about version
* update compatibility tests
2020-10-26 17:23:55 -05:00
Madison Dunitz
242546371b
Remove Continuous vars with 1 value from histogram, add to info drawer ( #1927 )
...
* remove single val continous metadata from histogram, add to info drawer
* refactor to save singleContinuous values in state
* fix edge case, single continuous values reappeard in rsb when clipped
2020-10-14 12:46:24 -05:00
Madison Dunitz
eb108feb37
Performance test annotations ( #1908 )
...
* make testing plan
* create annotaions sets for different num categories/dataset size
* annotation creation testing
* create scale and perf tests for annotations
* create make commands for tests
* get cell count if not set in test_datasets dict
2020-10-07 12:36:02 -05:00
Madison Dunitz
998fa4762d
run black formatter on repo ( #1891 )
...
* add black to lint make cmd
* add black dependency to installation to push test pipeline
2020-09-30 11:16:13 -05:00
Madison Dunitz and bmccandless
2ffe5ffcae
remove AppFeature and all references to it in the code/tests ( #1893 )
...
* remove AppFeature and all references to it in the code/tests
Co-authored-by: bmccandless <bmccandless@chanzuckerberg.com >
2020-09-29 18:31:59 -05:00
Madison Dunitz
af3c6e1d8e
config refactor ( #1854 )
...
* split out config
* add tests for base and app config, refactor client config out of app config
* refactor default config retrieval
* create config test class and helper functions
* move default_config into server to fix import issue
2020-09-29 16:42:46 -05:00
Madison Dunitz
4f339e89b1
dont cache schema ( #1836 )
2020-09-15 11:20:00 -05:00
65ea1b673f
Dunitz 1685 hosted annotations ( #1789 )
...
* save tiledb array to s3, dont cache user annotations
* Add option to disable annotation filename prompt (#1787 )
Co-authored-by: Madison Dunitz <dunitzm@gmail.com >
* set tiledb default context in cxg_adaptor
Co-authored-by: maniarathi <arathi.mani@chanzuckerberg.com >
Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com >
2020-08-24 18:26:08 -05:00
Madison Dunitz
b034055c35
update to get_secrets_key ( #1755 )
...
* raise exception when get_secrets fails, get db_uri and set as a default_dataset_config var
* log as info not an error
2020-08-14 18:17:21 -05:00
Madison Dunitz
6a82030558
remove db_uri secret ( #1751 )
...
* remove db_uri secret
* add test to catch bug in future
2020-08-14 12:38:46 -05:00
Madison Dunitz
2689d8d2c0
Create hosted user annotations [1685] ( #1726 )
...
* add function to retrieve latest annotation from db, db updates
* read and write tiledb arrays
* adding tests
2020-08-13 19:07:17 -05:00
Madison Dunitz
80f6137528
retrieve latest annotation from db ( #1723 )
...
* add function to retrieve latest annotation from db, db updates
* dont create directory in s3
2020-08-11 15:48:12 -05:00
Madison Dunitz
f632a8db91
Dunitz/db setup ( #1619 )
...
* initial database setup
2020-08-03 17:54:06 -05:00
Madison Dunitz
d748b9f691
use czi-sci-single-cell-eng github user/access token ( #1698 )
2020-07-30 15:54:57 -05:00
Madison Dunitz
666e6d9849
Add Deployment hook ( #1430 )
...
* test deployment hook
* remove test branch
* update heroku review deployment
2020-04-27 13:01:31 -07:00
Madison Dunitz