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58 Commits
Author SHA1 Message Date
Ronen 487bd13ff8 chore: add support for python 3.12 (#2694) 2024-09-12 14:16:46 -04:00
atarashansky 74fbec35fe chore: Release version 1.2.0 (#2652) 
* Bump version: 1.1.2 → 1.2.0-rc.0

* Bump version: 1.2.0-rc.0 → 1.2.0
 2023-12-19 14:13:08 -08:00
atarashanskyandatarashansky ffcf6eb5d8 chore: Release version 1.1.2 (#2611) 
* Bump version: 1.1.1 → 1.1.2-rc.0

* fix: release candidate 1.1.2

* Bump version: 1.1.2-rc.0 → 1.1.2

* promote

---------

Co-authored-by: atarashansky <atarashansky@CZIMACOS3990.hsd1.ma.comcast.net>
 2023-04-26 15:01:57 -04:00
Andrew Tolopko f48d06fb90 Bump version: 1.1.0 → 1.1.1 (#2572) 2022-09-21 15:33:28 -04:00
Andrew TolopkoSeve BadajozSeveriano Badajoz
 		a9044b01df release version 1.1.0 (#2548) 
* Bump version: 1.0.1 → 1.1.0-rc.0

* bump version to v1.1.0

* Bump version: 1.1.0-rc.0 → 1.1.0-rc.1

* bump version to v1.1.0 rc1

rc0 was previously used by an aborted release attempt

* Bump version: 1.1.0-rc.1 → 1.1.0

Co-authored-by: Seve Badajoz <severiano.badajoz@chanzuckerberg.com>
Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
 2022-08-23 10:02:23 -07:00
Andrew Tolopko 30e19e47c6 feat: add cli annotation subcommand (#2539) 
add `cellxgene annotate` subcommand for invoking MLflow model to generate new `obs` annotations, initially intended for cell type annotations.
 2022-07-29 05:15:54 -07:00
Severiano Badajoz 002c9a5c7f release version 1.0.1 (#2497) 
* Bump version: 1.0.0 → 1.0.1-rc.0

* Bump version: 1.0.1-rc.0 → 1.0.1
 2022-02-28 15:18:21 -08:00
Severiano Badajoz 853976b716 release version 1.0.0 (#2466) 
* Bump version: 0.19.0 → 1.0.0-rc.0

* Bump version: 1.0.0-rc.0 → 1.0.0
 2021-11-02 14:53:26 -07:00
Ben MR f4986c9c7d Release version 0.19.0 (#2444) 
* Bump version: 0.18.0 → 0.19.0-rc.0

* release can 0.19.0

* Bump version: 0.19.0-rc.0 → 0.19.0-rc.1

* bump rc

* Bump version: 0.19.0-rc.1 → 0.19.0

* release final
 2021-09-28 11:10:24 -07:00
Madison Dunitz 3ebbb0ccbf move common code into server, update tests and makefile (#2425) 
* move common code into server, update tests and makefile

remove backend directory, refactor

update smoke tests
 2021-09-20 18:50:06 -07:00
Ben MR 97caa5bcaa Upgrade min versions of dependencies [zh2426] (#2436) 
* Update dependencies

Flask to 2.0
Scipy etc. bumped to latest version not supporting 3.5
Others bumped to latest where possible

* py min v

* relax py version

* revert reqs changes
 2021-09-20 17:30:30 -07:00
Severiano Badajoz 780852fd49 docs: release 0.18.0 (#2413) 
* Bump version: 0.17.0 → 0.18.0-rc.0

* Bump version: 0.18.0-rc.0 → 0.18.0
 2021-08-31 15:52:30 -07:00
Severiano Badajoz 07816c2f93 docs: release 0.17.0 (#2278) 
* Bump version: 0.16.7 → 0.17.0-rc.0

* Bump version: 0.17.0-rc.0 → 0.17.0
 2021-07-07 15:07:37 -07:00
Madison Dunitz 78c9d24ed4 Refactor czi_hosted and server into backend directory, pull common code into backend/common, refactor tests (#2102) 
* move local_server -> backend/server server-> backend/czi_hosted, pull common code into backend/common update imports, tests and make commands
 2021-03-26 00:27:07 -05:00
maniarathi b3aadf6632 Release version 0.16.7 (#2081) 2021-02-27 22:10:53 -08:00
Marcus Kinsella fb61bd6e9c Split out the local backend (#2052) 
This splits the backend into two parts: the local backend for desktop cellxgene and the AWS backend for hosted cellxgene. The local backend is in local_server while the hosted remains in server. The general idea is to copy everything from server to local_server, pull unneeded stuff out of local_server, and keep server as-is for this PR. Not touching server means all the infra and deployment code will continue working just as it did before so we can make those changes incrementally.
 2021-02-18 12:58:22 -08:00
maniarathi 263e893b30 Revert "Patching (#1744)" (#1748) 
This reverts commit 6848f7a8b2.
 2020-08-14 11:22:39 -07:00
maniarathi 6848f7a8b2 Patching (#1744) 2020-08-13 14:36:42 -07:00
maniarathi 44c738e2f4 Bumping version of cellxgene for desktop release (#1733) 2020-08-12 09:58:52 -07:00
Severiano Badajoz 9c2f57df39 bump version to 0.15.0 (#1222) 2020-03-13 13:11:12 -07:00
bmccandless 907cc634f5 server refactor (#1140) 
This PR contains a refactoring to make adding new features easier.

The new features include supporting the tiledb format, and the multi dataset application.

The refactoring includes

Simplifying the directory structure and files.
a class structure to handle annotations (currently one type: AnnotationsLocalFile).
a class to handle application configuration
a class structure to handle matrix data (currently AnndataAdaptor and CxgAdaptor). CxgAdaptor uses tiledb.
Algorithms that were previously dependent on the scanpy anndata object are now generalized to work with an abstract interface.
The multi dataset option is not fully supported yet, and so the option to use it is hidden.
Use "cli launch --dataroot ..."
To access this feature.

All combinations of app single dataset/ app multi dataset and AnndataAdaptor/CxgAdaptor work with all the features, such as annotations, ontologies, diffexp.
 2020-02-19 10:22:35 -08:00
Matt Weiden 3dd50e5676 Version bump to 0.14.0 2020-01-27 16:18:19 -08:00
Bruce Martin c9b6044c4f release 0.13.0 (#1064) 2019-11-26 15:45:13 -08:00
Bruce Martin e581dec8f5 release 0.12.0 (#981) 2019-10-08 12:34:21 -07:00
Bruce Martin 21218f1c59 update contact and core team metadata (#947) 
* update contact and core team metadata

* fix spelling error
 2019-10-01 10:26:38 -07:00
Charlotte Weaver 77de22d1ed merge louvain and prepare extra requires (#897) 2019-08-29 12:49:19 -07:00
Charlotte Weaver 28c4d28308 extract prepare from main install (#887) 
* extract prepare from main install

* add requirements-prepare to manifest
 2019-08-21 14:26:01 -07:00
Colin Megill d16a69e158 bump version to 0.11.0 (#850) 
* bump version to 0.11.0

* manually fix version number
 2019-07-16 14:27:41 -04:00
Charlotte Weaver 3edb87d125 gui multiprocess - experimental feature (#780) 2019-06-06 10:52:05 -07:00
Bruce Martin ca9a6796d8 release 0.10.1 (#797) 2019-05-30 13:44:42 -07:00
Bruce Martin c6252825f3 release 0.10.0 (#794) 2019-05-29 16:55:43 -07:00
Charlotte Weaver c12cb2424a release bugfix (#749) 
* add __init__.py

* bump version
 2019-05-06 10:16:36 -07:00
Bruce Martin 1471d6b214 release 0.9.0 (#746) 2019-05-04 08:41:56 -07:00
Charlotte Weaver 8a72010768 PyQt5 -> PySide2 (#738) 2019-05-01 09:03:16 -07:00
Charlotte Weaver 9f10d8095a GUI app (experimental) (#730) 
* add default config

* first pass

* flake8

* cleanup

* first pass at using qthreads

* cleanup

* WIP

* better error handling

* improved UI

* bugfix

* fix merge bugs

* import order

* cleanup

* make gui requirements optional

* pr review requested changes

* Update server/gui/main.py

Co-Authored-By: csweaver <charlottesweaver@gmail.com>

* pr review request

* qt child class methods -> camelCase

* whitespace
 2019-04-30 12:52:15 -07:00
Charlotte Weaver ce8326ddea bump version (#684) 2019-04-01 14:42:22 -07:00
Charlotte Weaver d8fc7e40a1 Support python3.7 (#645) 
* Support python3.7

* add 3.7 env to travis
 2019-03-14 12:08:46 -07:00
Bruce Martin d8e3721846 bumpversion to 0.7.0 (#623) 2019-03-01 12:25:30 -08:00
Charlotte Weaver 4e67c645f8 bumped version (#602) 
0.6.0 was burned on pypi
 2019-02-14 10:00:16 -08:00
Charlotte Weaver 8b28d51dfa bump version (#601) 2019-02-13 16:29:14 -08:00
Charlotte Weaver ecaa32cfb2 bump version (#563) 2019-01-17 17:14:44 -08:00
Charlotte Weaver b02361a6bf bump version (#560) 2019-01-17 16:54:25 -08:00
Colin Megill a297ea30e2 bump version (#518) 2018-12-17 14:30:34 -05:00
Charlotte Weaver 46ad346df1 Clarify that we do not support python 3.7 (#512) 
* Update setup.py

* Readme: no python 3.7

* specify 3.6 in venv

* clarify 3.7 error

we will support it eventually
 2018-12-13 15:15:56 -08:00
Bruce Martin 95fd20b405 bump version to 0.3 (#498) 2018-12-05 14:35:17 -08:00
Charlotte Weaver 28f5263c88 bump version (#475) 2018-11-27 15:43:19 -08:00
Charlotte Weaver 0c26f227fe bump version (#470) 2018-11-26 15:38:47 -08:00
Charlotte Weaver f2612707bb bumped version (#466) 2018-11-26 11:42:56 -08:00
Charlotte Weaver 2b5094665f version 0.2.0 (#456) 2018-11-16 15:12:54 -08:00
Charlotte Weaver 1a5f49239a Release 0.0.4 (#447) 
* 0.0.3 bump

* release 0.0.4
 2018-11-15 16:43:59 -08:00