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Code Issues Packages Projects Releases Wiki Activity
911 Commits 22 Branches 50 Tags
7599af451f6fe92deff3b141c9b2f6b8a09fcf5d
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12 Commits
Author SHA1 Message Date
Bruce Martin 711f3b7048 Add support for anndata backed mode (#943) 
* initial cut at backed mode

* make flask multithreading conditional on debug flag

* update X access to support backed mode

* lint

* improve help message for backed mode

* fix tests

* add MatrixProxy to normalize supported matrix types

* add FAQ entry for --backed

* remove use of matrix.T

* clean up

* add ability to disable diffexp from CLI; add hueristic to detect likely slow diffexp calculation, and warn user

* fix tests

* do not print diffexp speed warning if diffexp is disabled

* tweak wording of diffexp speed messages

* add FAQ entry on --disable-diffexp

* revise heuristic for warning about slow diffexp

* use quick tooltip delay on diffexp button
 2019-10-08 11:16:07 -07:00
Bruce Martin 922c375333 Rename "layout" to "embedding" in the UI (#921) 
* rename "layout" to "embedding" in the UI

* docs changes for layout

* fix typo in data docs

* new help text, per PR review
 2019-09-16 15:34:14 -07:00
Bruce Martin 20317fd08f Add URL data locators to launch sub-command (#920) 
* initial commit of URL support for launch

* lint

* modify tests to use new data locator

* add locator unit tests

* fix typo in faq

* more lint

* update faq per PR review
 2019-09-15 09:01:53 -07:00
Charlotte Weaver 0f520f2fd4 [Merge on next release] Document how to install cellxgene prepare (#889) 
* Document how to install cellxgene prepare

after pr #887 merged

* formatting

* remove reference to cellxgene[louvain]
 2019-09-13 18:15:06 -07:00
Bruce Martin efa1709158 add multi-layout support to back-end (#766) 
* add multi-layout support to back-end

* remove obsolete code

* temporary code to apply heuristic choice of default layout

* fix tests

* update python tests

* more py lint

* PR review changes

* more PR lint

* PR lint
 2019-05-16 14:49:22 -07:00
Bruce Martin b521a17ffd improve column access speed for sparse matrices (#742) 
* improve column access speed for sparse matrices

* add FAQ entry about data format performance

* add note about using --sparse flag for prepare command

* clean up for PR review

* Update docs/faq.md

Co-Authored-By: bkmartinjr <bruce@chanzuckerberg.com>

* improvements to big data faq
 2019-05-01 15:44:01 -07:00
Justin Kiggins 1f735abe2b updates the roadmap & reorganizes the README (#712) 2019-04-18 13:10:03 -07:00
Charlotte Weaver 394da40bea Doc formatting improvements (#549) 2019-01-10 15:09:02 -08:00
Bruce Martin 5d60505407 remove --nan-to-num CLI parameter (#548) 
* remove --nan-to-num CLI parameter

* factor tests better

* lint - remove unused variables
 2019-01-10 15:03:03 -08:00
Justin Kiggins eceab377f7 cleans up landing page (#541) 2019-01-04 14:20:23 -08:00
GenevieveHaliburton 05a5a945bb Landing page faq comments (#536) 
* add to faq, clean up titles

* h4 headings for readibility

* Ordering, add section on errors
 2019-01-03 14:07:38 -08:00
Justin Kiggins bd523280a4 improved quickstart (#523) 2018-12-19 13:38:30 -08:00