* revert all commits to before Typescript migration
* update compat workflow to match latest deps (#2335)
* update compat workflow to match latest deps
* attempt to debug
* attempt to debug
* remove debugging code
* typo
* update deps to match desktop (#2340)
* fix: don't run lint with `--fix` on push tests (#2273)
* fix: don't run lint with `--fix` on push tests
* npx
Co-authored-by: maniarathi <mani.arathi@gmail.com>
Co-authored-by: Madison Dunitz <madison.dunitz@chanzuckerberg.com>
* rename X_approx_distribution to X_approximate_distribution (#2337)
* Correctly handle non-finite numbers in heuristic determination of X distribution (#2342)
* handle non-finites explicitly
* improve and test edge case handling for distribution estimation
* revert debugging changes
* code readability
* clean up type inferencing (#2332)
* unit tests for 64 bit conversion
* clean up type handling
* type inference tests
* more type inference fixes
* use schema to determine user intent for data typing
* stop using deprecated API
* fbs type encoding test
* add missing test
* add more tests
* correctly infer X type for CXG adaptor
* lint
* fix typo
* ts migration
* cleanup from PR review
* lint
* PR review changes
* remove unused packages from client (#2359)
* remove unused packages from client
* add missing peer dep
* fix: disable FE auth testing on compatibility tests (#2377)
* update: release process (#2277)
Co-authored-by: maniarathi <mani.arathi@gmail.com>
* fix: remove spaces in param setup (#2380)
* delete deploy workflow (#2396)
* undo reformatting which now does not pass lint
* fix snapshots which changed due to npm dep changes
* add missing quoting to snapshot
* another snapshot typo fix
* TS Revert (2) - replay PR #2347 and #2354 (#2403)
* replay edits from PR 2347
* TS Revert (3) - replay edits in PR #2327 (#2404)
* replay edits in PR 2327
* TS Revert (4) - replay PR #2355 (#2405)
* replay edits in PR 2355
* add additional babel config
* reformat with new prettier config
Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
Co-authored-by: maniarathi <mani.arathi@gmail.com>
Co-authored-by: Madison Dunitz <madison.dunitz@chanzuckerberg.com>
* disable formatting rules for eslint and add prettier in lint-staged
* update npm modules
* set plugin-proposal-private-methods to loose
* update snapshots due to popover package update
* add missing quotes
Co-authored-by: bkmartinjr <bruce@chanzuckerberg.com>
* __test: create geneset
* example dataset test geneset
* delete geneset test
* edit __test
* gene crud
* Update client/Makefile
Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
* copy gene sets separately
* make fix
* ignore test files locally
* csv update
* updated csvs
* fix unit tests for gene set load routes
* add missing fix to czi_hosted unit test
* pin tiledb version, for czi_hosted backend, to <0.9
* Revert tiledb pin to be less than 0.9. Broken tests have been updated in main branch.
* newline, gitignore
* color by and subset
* diffexp sets equal
* add diff exp test class
* fix data class
* diffexp snapshot
* snapshot
* snap3
* snapshot parentInnerhtml
* remove snap
* updated anno snaps
* add test class to gene list div
* new snapshots
* kick off
* Revert "kick off"
This reverts commit 743f551d55.
* remove import
* eol
* revert changes to csv re: gene tests
* global name
Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
Co-authored-by: bkmartinjr <bruce@chanzuckerberg.com>
Co-authored-by: Arathi Mani <arathi.mani@chanzuckerberg.com>
Co-authored-by: maniarathi <mani.arathi@gmail.com>
* update package lock
* allow falsey vals
* remove old diff exp handling
* save diff exp results as geneset
* delete test
* check for undefined or null
* use global geneset description for diffexp
* remove diffexp special code, no longer showing adjpval + logfoldchange
* remove differential map to state
* remove clear from FSM, since we no longer support those actions
* restore controlHelpers test with todo
* colorby histo
* color graph by mean expression
* move var index after returns
* add genesets as an argument
* varindex
* undo redo for mean expression
* destructure
* ternary
* Revert "destructure"
This reverts commit 2d9432c1c7.
* color by mean for diffexp
* geneset description add
* edit geneset description
* default state for desc
* remove log
* naming, todo
* check for both dup name and desc
* fixes
* do not store gene set modal state in history stack
* Update createGenesetDialogue.js
* Update editGenesetNameDialogue.js
Co-authored-by: bkmartinjr <bruce@chanzuckerberg.com>
Severiano Badajoz