13 Commits

Include renames

Author	SHA1	Message	Date
maniarathi	023ae10822	Update unit tests for CXG conversion to check for actual content rather than file names alone which have changed with the recent 0.9 release of tiledb's python package. (#2249) ... * Update unit tests for CXG conversion to check for actual content rather than file names alone which have changed with the recent 0.9 release of tiledb's python package. * Some cleanup * Undo a bad line	2021-06-19 09:37:05 -07:00
3 people	28b526b3fc	feat: diffexp returns two genesets (#2230) ... * feat: return two lists for diffexp (#2221) * sp * split out derive sort order, tests passing * sp * return diff exp results in two lists * update * copy implementation over to desktop * add tests for two lists * small fixes to complete backend implementation * accept new diffexp response * map diff exp response to genesets * delete ) * name diffexp genesets with population names * take constants out of state and allow width prop to override * shorten mini-histo properly truncate and resize depending on expansion * prepend new genesets * rename data within diffexp action * backend * move diffexp ttest to common code module, update tests * update for unit tests * reference actual var Co-authored-by: Madison Dunitz <madison.dunitz@chanzuckerberg.com> Co-authored-by: Madison Dunitz <dunitzm@gmail.com>	2021-06-08 21:02:19 +00:00
maniarathi	59ec3afbb9	Pin versions of flatbuffer and Flask to be less than 2.0 (#2199)	2021-05-12 15:13:10 -07:00
Madison Dunitz	4666f1f044	add rule for static assest without dataset id (#2194)	2021-05-07 21:17:31 -07:00
Colin Megillandbkmartinjr	d04dba225f	Filename dialogue includes gene sets (#2185) ... * change filenames * gene-sets to anno dialogue * logging, lambda * celllabels * cell dash labels * space * fix 2182 - annotation file name change on the backend Co-authored-by: bkmartinjr <bruce@chanzuckerberg.com>	2021-05-07 17:32:11 -04:00
Bruce Martin	f2e9aecebe	hosted gene sets routes, plus a few bug fixes (#2155) ... * first cut at hosted gs routes * lint * update tests to match csv parser changes * update tests to new API * update gene set name validation rules to match requirements * add path mapping from dataset to geneset * add test cases for geneset GET route * fix test assertion * remove debugging code * update gene set uri mapping function * fix error message * allow extra user-specified headers in gene set csv file * clarify comment	2021-04-27 13:58:58 -07:00
maniarathi	ebeb1c8818	Fix command to EB to use the artifact.zip file during deployment instead of the source code in the directory. (#2174)	2021-04-23 11:07:57 -07:00
Bruce Martin	860547ced1	update requirements for server (#2172)	2021-04-21 17:12:16 -07:00
Madison Dunitz	63cf82c60e	Dunitz/scale test update (#2159)	2021-04-18 13:33:04 -05:00
Bruce Martin	ae30b66123	gene set summary progress (#2127) ... * revert removal of cache control headers * checkpoint work on revising summary route * add summary query support to annoMatrix * summarize route cleanup * add mising file * clean up summarize route * add summary histogram * update deps * lint * more lint * lint * manage crossfiler during gene set state changes * remove obsolete debugging code * correctly perform async watch in histogram * better error handling	2021-03-30 14:43:53 -07:00
Madison Dunitz	ae23c9e5b9	white space change to run tests (#2132) ... * update tiledb reqs	2021-03-30 14:34:39 -05:00
Bruce Martin	b494dd31f4	revert removal of cache control headers (#2118) ... * revert removal of cache control headers * always generate cache header for health route	2021-03-26 08:49:44 -07:00
Madison Dunitz	78c9d24ed4	Refactor czi_hosted and server into backend directory, pull common code into backend/common, refactor tests (#2102) ... * move local_server -> backend/server server-> backend/czi_hosted, pull common code into backend/common update imports, tests and make commands	2021-03-26 00:27:07 -05:00