maniarathi
023ae10822
Update unit tests for CXG conversion to check for actual content rather than file names alone which have changed with the recent 0.9 release of tiledb's python package. ( #2249 )
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* Update unit tests for CXG conversion to check for actual content rather than file names alone which have changed with the recent 0.9 release of tiledb's python package.
* Some cleanup
* Undo a bad line
2021-06-19 09:37:05 -07:00
maniarathi
59ec3afbb9
Pin versions of flatbuffer and Flask to be less than 2.0 ( #2199 )
2021-05-12 15:13:10 -07:00
maniarathi
ebeb1c8818
Fix command to EB to use the artifact.zip file during deployment instead of the source code in the directory. ( #2174 )
2021-04-23 11:07:57 -07:00
maniarathi
b60d20eb2f
Fix phony ( #2173 )
2021-04-22 18:00:00 -07:00
maniarathi and Timmy Huang
e2ce9a90ca
Remove updates coming from cookie banner since updates have already been executed. ( #2161 )
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Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com >
2021-04-19 08:42:34 -07:00
maniarathi
b3aadf6632
Release version 0.16.7 ( #2081 )
2021-02-27 22:10:53 -08:00
09466a5c32
fix: server/requirements-dev.txt to reduce vulnerabilities ( #2055 )
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The following vulnerabilities are fixed by pinning transitive dependencies:
- https://snyk.io/vuln/SNYK-PYTHON-RSA-1038401
Co-authored-by: snyk-bot <snyk-bot@snyk.io >
Co-authored-by: Madison Dunitz <madison.dunitz@chanzuckerberg.com >
2021-02-25 12:24:06 -08:00
maniarathi
9a34264f92
Pin tiledb version to exclude 0.7.2 ( #1993 )
2020-11-30 11:54:33 -05:00
maniarathi
66e55ba59a
Replace outdated locustio package with locust package. ( #1992 )
2020-11-30 10:11:57 -05:00
maniarathi
f700fb7757
Setup codeql scanning for security and code quality analysis ( #1991 )
2020-11-24 21:53:10 -05:00
maniarathi
ae310097dd
Fix typo ( #1990 )
2020-11-24 12:23:21 -05:00
maniarathi
ea70a35a01
Fixing locust scale tests for cellxgene loading apis and adding a Github Actions workflow to run the tests every Sunday. ( #1988 )
2020-11-24 09:08:57 -08:00
maniarathi
9793398737
Add in missing previous crossfilter which was causing the re-embedding feature to fail. ( #1936 )
2020-10-21 09:16:13 -07:00
maniarathi
377e4bccaa
Remove errornous checking for converting float64 to float32. In reality the slight difference by downcasting is totally fine. ( #1935 )
2020-10-19 10:31:36 -07:00
maniarathi
798976e4c1
Fix custom color handling ( #1929 )
2020-10-13 15:47:56 -07:00
maniarathi
5325495123
Speed up dataset drawer rendering ( #1926 )
2020-10-12 11:20:58 -07:00
maniarathi
86ff48ae36
Revert "Allow columns encoded in float64 to be rendered as part of continuous value histograms. ( #1905 )" ( #1925 )
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This reverts commit b048fd8d9a
2020-10-09 10:09:32 -07:00
maniarathi
b048fd8d9a
Allow columns encoded in float64 to be rendered as part of continuous value histograms. ( #1905 )
2020-10-06 12:59:07 -07:00
maniarathi
4aabb8e092
Make sure there are more than 1 values in a category before rendering it ( #1871 )
2020-09-29 15:32:21 -07:00
maniarathi
863ca8be03
Fix license years and add CZI ( #1882 )
2020-09-28 16:44:56 -07:00
maniarathi
a63bf9d5a3
Change psycopg to be binary ( #1842 )
2020-09-16 14:46:59 -07:00
maniarathi
9fac6849a3
Fix import of anndata from master so that there aren't issues with scanpy version checking. ( #1834 )
2020-09-14 17:19:24 -07:00
maniarathi
4b240920e2
Pass in the previous crossfilter when creating a new annomatrix for a switched embedding in order to retain the previous selection of cells. ( #1832 )
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* Pass in the previous crossfilter when creating a new annomatrix for a switched embedding in order to retain the previous selection of cells.
* Address Bruce's PR comment
2020-09-12 10:32:00 -07:00
maniarathi
ed865e9a57
Update the release process for community release to include release candidate versioning ( #1802 )
2020-08-31 16:16:21 -07:00
maniarathi
5dfe0043c3
Serves static assets from each dataset root URL and switch the publicPath to be a relative path. ( #1786 )
2020-08-22 10:04:40 -07:00
maniarathi
bc150a8469
Fixing bugs in cxg conversion tool ( #1782 )
2020-08-22 09:53:59 -07:00
maniarathi
a5c9ffa880
When reading annotations from tiledb, check if the values are byte literals and if so, decode them. Also pin s3f3 to 0.4.2. ( #1788 )
2020-08-22 09:42:11 -07:00
maniarathi
053f39d49e
Cleaning up one script that makes use of the non-existent cxgtool. ( #1765 )
2020-08-17 18:40:26 -07:00
maniarathi
994c20c094
Move cxgtool into CLI and modularize conversion functions ( #1701 )
2020-08-17 17:28:29 -07:00
maniarathi
508889f74b
Refactoring cxg utility classes in preparation for CXG conversion tooling ( #1739 )
2020-08-14 16:51:13 -07:00
maniarathi
263e893b30
Revert "Patching ( #1744 )" ( #1748 )
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This reverts commit 6848f7a8b2
2020-08-14 11:22:39 -07:00
maniarathi
6848f7a8b2
Patching ( #1744 )
2020-08-13 14:36:42 -07:00
maniarathi
44c738e2f4
Bumping version of cellxgene for desktop release ( #1733 )
2020-08-12 09:58:52 -07:00
maniarathi
49b89ba7af
Swap using href to using origin+pathname to avoid errors with including any query parameters from being passed in. ( #1722 )
2020-08-07 10:02:22 -07:00
maniarathi
0d94c9e092
DRY-ing flatbuffer code ( #1716 )
2020-08-05 11:56:34 -07:00
maniarathi
cdae4f9f10
Reorganize the server testing directory ( #1705 )
2020-08-05 08:31:02 -07:00
maniarathi
af3a76c354
Adding relative links support to jekyll ( #1680 )
2020-07-29 12:38:46 -07:00
maniarathi
38ce1f90fb
Update issue templates
2020-07-27 12:57:59 -07:00
maniarathi
98c5cae9f4
Update issue templates
2020-07-27 12:55:44 -07:00
maniarathi
c25dd33d28
Removing duplicate index.html and regenerating files. ( #1672 )
2020-07-27 09:57:48 -07:00
maniarathi