Colin Megill
87ba3ff870
Merge branch 'main' into colinmegill/#632
2021-08-16 12:14:34 -07:00
Severiano Badajoz
3fdf5cac9d
fix: remove spaces in param setup ( #2380 )
2021-08-13 17:01:10 +00:00
Bruce Martin
4b417cb5a5
undoable TS typing ( #2374 )
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* type undoable-related TS
* style change to type declaration
2021-08-12 17:14:09 -07:00
Severiano Badajoz
925b785b1f
fix: disable FE auth testing on compatibility tests ( #2377 )
2021-08-12 18:34:04 +00:00
Bruce Martin
660dff256c
add array type foundations ( #2376 )
2021-08-12 07:17:05 -07:00
Timmy Huang
59c475b821
chore: extract schema types ( #2375 )
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* chore: extract schema types
* address comments
2021-08-12 03:12:21 +00:00
Timmy Huang
fc60b2acef
fix: thuang-fix-tsconfig-path ( #2372 )
...
Thanks so much for the quick review, Bruce!!
2021-08-11 01:38:33 +00:00
Colin Megill
b553da0264
async 1
2021-08-05 16:39:22 -07:00
Colin Megill
b67142e98f
embedding to tsx
2021-08-04 16:02:52 -07:00
Colin Megill
22a0921147
Merge branch 'main' into colinmegill/#632
2021-08-04 14:43:09 -07:00
Colin Megill
020e562f5c
merge typescript changes
2021-08-04 14:42:31 -07:00
Timmy Huang
26de334274
chore: add schema types ( #2369 )
2021-08-04 13:16:18 -07:00
Timmy Huang
95ce39f2e9
chore: Add global type file ( #2363 )
2021-08-03 21:52:10 +00:00
Bruce Martin
03bb904f24
remove unused packages from client ( #2359 )
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* remove unused packages from client
* add missing peer dep
2021-07-30 20:00:00 -07:00
Colin Megill
01d34580b9
genesets e2e tests, undo/redo ( #2327 )
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* undo redo create
* edit undo redo
* all tests pass, add, edit
* description
* remove RER1
* remove rer1
* remove from hosted
2021-07-30 16:52:49 -07:00
Timmy Huang and bkmartinjr
5ab96ed360
disable formatting rules for eslint and add prettier in lint-staged ( #2355 )
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* disable formatting rules for eslint and add prettier in lint-staged
* update npm modules
* set plugin-proposal-private-methods to loose
* update snapshots due to popover package update
* add missing quotes
Co-authored-by: bkmartinjr <bruce@chanzuckerberg.com >
2021-07-30 12:27:47 -07:00
Colin Megill
60d89b9478
flip scale
2021-07-30 10:59:42 -07:00
Bruce Martin
97fb98b4eb
API update for tests ( #2354 )
2021-07-29 20:27:29 -07:00
Bruce Martin
0e7daea737
temp fixes for TS lint ( #2352 )
2021-07-29 18:31:38 -07:00
Bruce Martin
8136387127
Clean up max-category front-end limit ( #2347 )
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* remove topN category truncation from component rendering layer
* clean up category item limit implementation
* name change for clarity
* fix snapshot
* comments
2021-07-29 16:05:10 -07:00
Mim Hastie and Timmy Huang
27575b8d86
Added @typescript-eslint/recommended config with suppressions ( #2345 )
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* Disabled @blueprintjs/classes-constants. #2288 .
* thuang-eslint-bp-off (#2344 )
* Disabled @blueprintjs/classes-constants on webpack dev and shared. #2288 .
* Added TS recommended, suppress lint errors codemod.
* Added per-error/warning ignore for tests.
* Added per-error/warning ignore for configuration.
* Added per-error/warning ignore for src. Removed suppress package.
* Minor linting.
Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com >
2021-07-28 16:06:34 -07:00
Bruce Martin
32f60a1547
clean up type inferencing ( #2332 )
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* unit tests for 64 bit conversion
* clean up type handling
* type inference tests
* more type inference fixes
* use schema to determine user intent for data typing
* stop using deprecated API
* fbs type encoding test
* add missing test
* add more tests
* correctly infer X type for CXG adaptor
* lint
* fix typo
* ts migration
* cleanup from PR review
* lint
* PR review changes
2021-07-28 15:10:12 -07:00
Colin Megill
c2b12abe2b
toggle and scale dotplot
2021-07-26 13:23:21 -07:00
934cc5c69b
TS migration. #2288 . ( #2328 )
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* Added TS. Updated build and linting config. Added types.
* [ts-migrate][.] Rename files from JS/JSX to TS/TSX
Co-authored-by: ts-migrate <>
* [ts-migrate][.] Run TS Migrate
Co-authored-by: ts-migrate <>
* Corrected files mangled by ts-migrate.
* Updated lint config, minor linting.
* Re-enabled Husky.
* Updated tests and config.
* Reverted webpack devtool config.
* Removed obsolete snapshots.
* Added annotations snap.
* Updated tsconfig includes wrt linting.
* Removed ts-migrate.
Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com >
2021-07-26 20:18:17 +00:00
Colin Megill
2462d4afb1
color scale, button
2021-07-23 13:29:27 -07:00
Colin Megill
02e79d502f
add classnames to canvases
2021-07-23 13:29:27 -07:00
Colin Megill
9c2323b7bc
queries
2021-07-23 13:29:27 -07:00
Colin Megill
e7200ce6c3
todo comment
2021-07-23 13:29:27 -07:00
Colin Megill
b7ffb2748d
colorby type
2021-07-23 13:29:27 -07:00
Colin Megill
7ab8a8894d
no overlap
2021-07-23 13:29:27 -07:00
Colin Megill
7b01e9e67b
remove hardcoded geneset
2021-07-23 13:29:27 -07:00
Colin Megill
72ee670620
remove logs
2021-07-23 13:29:27 -07:00
Colin Megill
e21cac65bf
set row and column
2021-07-23 13:29:27 -07:00
Colin Megill
bb5bbaac8a
reducer
2021-07-23 13:29:27 -07:00
Colin Megill
e29a6f72c2
d3 scale for dot size
2021-07-23 13:29:10 -07:00
Colin Megill
ed97013277
dotplot button
2021-07-23 13:29:10 -07:00
Colin Megill
2b29a152b9
metadata as var, maxsize todo
2021-07-23 13:28:17 -07:00
Colin Megill
f0e9b1ab91
dotplot proto full
2021-07-23 13:28:17 -07:00
Colin Megill
c489221296
geneset iterate
2021-07-23 13:28:17 -07:00
Colin Megill
0a69af98c5
break out load and err
2021-07-23 13:28:17 -07:00
Colin Megill
11570273e0
dotplot 1
2021-07-23 13:28:17 -07:00
Colin Megill
5f9d0a6b34
logging out values
2021-07-23 13:28:17 -07:00
Bruce Martin
3d7490e0a9
gene expression perf work ( #2305 )
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* gene expression perf work
* lint
2021-07-16 12:56:42 -07:00
Bruce Martin
0667ad0274
remove experimental reembedding support ( #2301 )
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* remove experimental reembedding support
* lint
* lint
* add prepare requirements to requirements-dev
* oops, revert accidental deletion of import
* more test modifications
* remove obsolete unit tests
2021-07-15 13:55:26 -07:00
Bruce Martin
e334fbe96e
remove experimental ontology support ( #2300 )
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* remove experimental ontology support
* lint
* remove ontologies from unit tests
* additional test changes
2021-07-14 07:23:38 -07:00
Severiano Badajoz
07816c2f93
docs: release 0.17.0 ( #2278 )
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* Bump version: 0.16.7 → 0.17.0-rc.0
* Bump version: 0.17.0-rc.0 → 0.17.0
2021-07-07 15:07:37 -07:00
signechambers1 and Seve Badajoz
56fcbae672
Remove safari from supported browsers ( #2272 )
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* Update README.md
* Update package.json
* Update obsoleteHTMLTemplate.html
* remove unneeded polyfills
* explicit deny safari
* remove from webpack and update lock
Co-authored-by: Seve Badajoz <sbadajoz@chanzuckerberg.com >
2021-07-06 10:09:51 -10:00
face1b3033
genesets e2e tests ( #2241 )
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* __test: create geneset
* example dataset test geneset
* delete geneset test
* edit __test
* gene crud
* Update client/Makefile
Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com >
* copy gene sets separately
* make fix
* ignore test files locally
* csv update
* updated csvs
* fix unit tests for gene set load routes
* add missing fix to czi_hosted unit test
* pin tiledb version, for czi_hosted backend, to <0.9
* Revert tiledb pin to be less than 0.9. Broken tests have been updated in main branch.
* newline, gitignore
* color by and subset
* diffexp sets equal
* add diff exp test class
* fix data class
* diffexp snapshot
* snapshot
* snap3
* snapshot parentInnerhtml
* remove snap
* updated anno snaps
* add test class to gene list div
* new snapshots
* kick off
* Revert "kick off"
This reverts commit 743f551d55sbadajoz@chanzuckerberg.com >
Co-authored-by: bkmartinjr <bruce@chanzuckerberg.com >
Co-authored-by: Arathi Mani <arathi.mani@chanzuckerberg.com >
Co-authored-by: maniarathi <mani.arathi@gmail.com >
2021-07-01 21:29:06 -04:00
Severiano Badajoz
b714c18e75
feat: frontend geneset validation ( #2258 )
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* add geneset name validation
* validate genes before addition
* display error messages
2021-07-01 22:09:50 +00:00
Severiano Badajoz
b8b1d0dd9e
fix: reset gene set colorScale on gene set deletion ( #2264 )
2021-06-30 16:46:44 -07:00
Colin Megill