Madison Dunitz
998fa4762d
run black formatter on repo ( #1891 )
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* add black to lint make cmd
* add black dependency to installation to push test pipeline
2020-09-30 11:16:13 -05:00
Madison Dunitz and bmccandless
2ffe5ffcae
remove AppFeature and all references to it in the code/tests ( #1893 )
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* remove AppFeature and all references to it in the code/tests
Co-authored-by: bmccandless <bmccandless@chanzuckerberg.com >
2020-09-29 18:31:59 -05:00
Madison Dunitz
af3c6e1d8e
config refactor ( #1854 )
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* split out config
* add tests for base and app config, refactor client config out of app config
* refactor default config retrieval
* create config test class and helper functions
* move default_config into server to fix import issue
2020-09-29 16:42:46 -05:00
Madison Dunitz
4f339e89b1
dont cache schema ( #1836 )
2020-09-15 11:20:00 -05:00
65ea1b673f
Dunitz 1685 hosted annotations ( #1789 )
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* save tiledb array to s3, dont cache user annotations
* Add option to disable annotation filename prompt (#1787 )
Co-authored-by: Madison Dunitz <dunitzm@gmail.com >
* set tiledb default context in cxg_adaptor
Co-authored-by: maniarathi <arathi.mani@chanzuckerberg.com >
Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com >
2020-08-24 18:26:08 -05:00
Madison Dunitz
b034055c35
update to get_secrets_key ( #1755 )
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* raise exception when get_secrets fails, get db_uri and set as a default_dataset_config var
* log as info not an error
2020-08-14 18:17:21 -05:00
Madison Dunitz
6a82030558
remove db_uri secret ( #1751 )
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* remove db_uri secret
* add test to catch bug in future
2020-08-14 12:38:46 -05:00
Madison Dunitz
2689d8d2c0
Create hosted user annotations [1685] ( #1726 )
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* add function to retrieve latest annotation from db, db updates
* read and write tiledb arrays
* adding tests
2020-08-13 19:07:17 -05:00
Madison Dunitz
80f6137528
retrieve latest annotation from db ( #1723 )
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* add function to retrieve latest annotation from db, db updates
* dont create directory in s3
2020-08-11 15:48:12 -05:00
Madison Dunitz
f632a8db91
Dunitz/db setup ( #1619 )
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* initial database setup
2020-08-03 17:54:06 -05:00
Madison Dunitz
d748b9f691
use czi-sci-single-cell-eng github user/access token ( #1698 )
2020-07-30 15:54:57 -05:00
Madison Dunitz
666e6d9849
Add Deployment hook ( #1430 )
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* test deployment hook
* remove test branch
* update heroku review deployment
2020-04-27 13:01:31 -07:00
Madison Dunitz