Commit Graph
14 Commits
Author SHA1 Message Date
Bruce Martin 660dff256c add array type foundations (#2376) 2021-08-12 07:17:05 -07:00
Timmy Huangandbkmartinjr 5ab96ed360 disable formatting rules for eslint and add prettier in lint-staged (#2355)
* disable formatting rules for eslint and add prettier in lint-staged

* update npm modules

* set plugin-proposal-private-methods to loose

* update snapshots due to popover package update

* add missing quotes

Co-authored-by: bkmartinjr <bruce@chanzuckerberg.com>
2021-07-30 12:27:47 -07:00
Bruce Martin 0e7daea737 temp fixes for TS lint (#2352) 2021-07-29 18:31:38 -07:00
Bruce Martin 8136387127 Clean up max-category front-end limit (#2347)
* remove topN category truncation from component rendering layer

* clean up category item limit implementation

* name change for clarity

* fix snapshot

* comments
2021-07-29 16:05:10 -07:00
Mim HastieandTimmy Huang 27575b8d86 Added @typescript-eslint/recommended config with suppressions (#2345)
* Disabled @blueprintjs/classes-constants. #2288.

* thuang-eslint-bp-off (#2344)

* Disabled @blueprintjs/classes-constants on webpack dev and shared. #2288.

* Added TS recommended, suppress lint errors codemod.

* Added per-error/warning ignore for tests.

* Added per-error/warning ignore for configuration.

* Added per-error/warning ignore for src. Removed suppress package.

* Minor linting.

Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>
2021-07-28 16:06:34 -07:00
Bruce Martin 32f60a1547 clean up type inferencing (#2332)
* unit tests for 64 bit conversion

* clean up type handling

* type inference tests

* more type inference fixes

* use schema to determine user intent for data typing

* stop using deprecated API

* fbs type encoding test

* add missing test

* add more tests

* correctly infer X type for CXG adaptor

* lint

* fix typo

* ts migration

* cleanup from PR review

* lint

* PR review changes
2021-07-28 15:10:12 -07:00
934cc5c69b TS migration. #2288. (#2328)
* Added TS. Updated build and linting config. Added types.

* [ts-migrate][.] Rename files from JS/JSX to TS/TSX

Co-authored-by: ts-migrate <>

* [ts-migrate][.] Run TS Migrate

Co-authored-by: ts-migrate <>

* Corrected files mangled by ts-migrate.

* Updated lint config, minor linting.

* Re-enabled Husky.

* Updated tests and config.

* Reverted webpack devtool config.

* Removed obsolete snapshots.

* Added annotations snap.

* Updated tsconfig includes wrt linting.

* Removed ts-migrate.

Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>
2021-07-26 20:18:17 +00:00
Bruce Martin ae30b66123 gene set summary progress (#2127)
* revert removal of cache control headers

* checkpoint work on revising summary route

* add summary query support to annoMatrix

* summarize route cleanup

* add mising file

* clean up summarize route

* add summary histogram

* update deps

* lint

* more lint

* lint

* manage crossfiler during gene set state changes

* remove obsolete debugging code

* correctly perform async watch in histogram

* better error handling
2021-03-30 14:43:53 -07:00
Bruce Martin 75cb513dd9 re-implement re-embeddings (#1679)
* fix mispelling

* re-implement re-embedding

* always load base embedding to fetch counts

* format

* lint

* fix tests

* lint

* fix accept handling

* test log

* more debug

* more

* more

* more

* more

* remove logging

* logging

* jsonify

* remove debugging logs

* lint

* clean up errors a bit

* fix issue found in PR review

* PR review changes
2020-07-30 12:31:36 -07:00
Bruce Martin 0a626537d5 subset embedding UI improvement (#1667)
* add user flag feature to annomatrix

* add implicit subsetting for partial embeddings

* lint

* add embedding cell counts to embedding choice menu

* layout
2020-07-27 09:58:14 -07:00
Bruce Martin 83d572cde2 force categorical treatment of user annotations (#1663) 2020-07-22 17:02:19 -07:00
Bruce Martin a44da11f3f correctly handle non-string categoricals (#1660) 2020-07-22 12:14:31 -07:00
Bruce Martin 2715157793 categorical UI improvements (#1649)
* return undefined for unknown fields

* memoize fetch response

* handle rename of user annotation

* performance and cleanup

* fix snapshots

* fix comment

* lint
2020-07-20 08:52:41 -07:00
Bruce Martin 1269e188be Redux refactor (#1571)
* refactor categorical controls state

* lint

* fix race condition in tests

* fix typo

* add missing update on subset

* remove obsolete code

* update jest and puppeteer major version; update all minors

* update when label changes

* remove lint from tests; increase timeouts in e2e tests

* initial refactoring to new async annomatrix

* refine error handling

* fix bad merge

* add continuous legend

* lint

* fix memoization in color table creators

* partial implementation of user defined annotations

* add new annotations action creator file

* first pass at user annotations

* additional user annotation bug fixes

* user annotation auto-save

* unit test cleanup

* lint

* refactor into multiple files

* cleanup

* add column GC

* fix several bugs in user annotations

* remove debug code

* no anonymous functions

* undo redo cleanup

* file cleanup

* scatterplot

* performance

* cleanup

* remove old code

* render in parallel with load

* fix race condition

* simply graph rendering

* render throttle DRY

* fix category label order

* fix typo in e2e test setup

* re-fix the e2e test setup

* be more tolerant of races

* anno matrix unit tests

* temp disable reembedding

* pilot port continuous histo to react-async

* name change

* lint

* fix repaint bug

* typo fix

* update snap to match new ids

* world/universe name cleanup

* move annoMatrix to src dir

* use private underscore naming convention

* fix corner case in all selected

* name cleanup

* add layout control

* init edge case

* lint

* port scatterplot

* fix label indexing bug and improve tests

* port category to react-async

* fix user annotation labelling while subset

* select all of prev layout on layout switch

* fix race with crossfilter update

* prettier lint

* fix misleading comment

* fix url composition in loader

* first pass at crossfilter tests

* lint

* lint

* fix typo

* improved error handling for network errors

* fix memoization bug

* add memo

* refactor for performnce

* add missing single-value handling in select exact parser

* small bugs discovered by tests

* lint

* additional crossfilter unit tests

* remove extraneous comment

* add support for automatic category determination

* lint

* fix render bug in category

* take advantage of schema categories guarantee

* lint

* do not clear history when resetting

* enhanced annomatrix gc

* lint

* finish renaming to follow conventions; fix clone race bug

* lint

* add priority based loading to improve initial data load UX

* crossfilter cache perf

* perf tuning

* remove timers

* documentation

* PR review changes

* PR review changes

* more PR review edits

* improve clarity of comment

* more PR review fixes

* port centroidLabels to use react-async

* remove dead code

* pr review updates

* oops, remove logging
2020-07-14 13:53:33 -07:00