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0.0.4
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87 Commits

Author SHA1 Message Date
Bruce Martin
00a68276a2 diffexp performance & UX improvements (#431) 
* new diffexp REST API spec

* new diffexp REST API; faster diffexp and dataframe slicing

* first draft of fast diffexp

* convert variance calculation to two-pass method

* lint

* update front-end use of API

* fix typo in spec

* disable content compression

* catch index filter format errors

* clean up of dead code

* resolve PR review comments
 2018-11-14 12:51:24 -08:00
Colin Megill
dbff824854 Viewport fills entire screen (#430) 
* full pane webgl and svg

* fixes for full pane selection and centering

* force graph remount, clear brush state
 2018-11-13 11:45:38 -05:00
Colin Megill
9decf134e0 fixed scatterplot infinite render (#429) 
* add more to state from componentDidMount

* always brush

* destructure

* move render to function

* fixed scatterplot infinite render

* remove logging
 2018-11-09 20:28:22 -05:00
Bruce Martin
9f7e1f1cb0 use quicksort instead of default system sort (#413) 2018-11-07 13:35:00 -08:00
Bruce Martin
2d5bc9d0c9 Performance work, plus fix #405 (#406) 
* remove memoization

* update to flash 1.0.2; turn on threading

* stand-alone helper routines for array slicing

* fix issue #405

* reset diffexp state when world changes

* performance work in dimension creation; fix world slicing bug

* update tests to match new state mgmt api

* update flask

* do not make dimensions for useless annotations

* update test to match optimizations
 2018-11-05 13:57:58 -08:00
Colin Megill
0dcc17d6d5 rerender axes on regraph (#403) 
* remove cells loading now that we have toast

* rerender histogram axes

* remove logging
 2018-11-05 09:29:49 -05:00
Bruce Martin
6e46a65c32 fix add gene action format bug (#398) 2018-11-01 14:24:49 -07:00
Bruce Martin
9d7754e31e Improve front-end HTTP error handling (#397) 
* UI for HTTP error handing in diffexp route

* HTTP error handling for other routes

* clean up toasters
 2018-10-30 19:02:11 -07:00
Bruce Martin
bc15e9229f update config params to match REST API spec (#393) 2018-10-30 11:03:40 -07:00
Colin Megill
ed66ae6e4a tooltips, copy, scatterplot tray (#383) 
* tooltips, copy, scatterplot tray

* reset interface

* copy
 2018-10-26 19:21:39 -04:00
Colin Megill
d221d76be6 test for world, graph border, legend label (#378) 
* test for world, graph border, legend label

* typo
 2018-10-25 12:16:55 -04:00
Colin Megill
7aa390b5a1 left sidebar improvements (#368) 
* left sidebar improvements

* lint
 2018-10-24 10:21:18 -04:00
Colin Megill
96675f806c hotfix duplicate globals declaration 2018-10-22 16:39:41 -04:00
Colin Megill
df671192be Begin integrating blueprint (#359) 
* toast test

* modify webpack build to allow for global CSS; use CSS modules to scope component styling

* remove heatmap

* add label to index resets

* swapping out buttons for blueprint

* adding constants to globals

* swapping out blueprint buttons

* title position, sidebar improvements

* sidebar styles

* adding toasts for validation errors

* zebra section trial

* integrating blueprint, switching buttons over, breaking out scatter

* clean up console
 2018-10-22 15:46:37 -04:00
Bruce Martin
0c271bc815 categorical metadata performance work (#356) 
* do not create unecessary option state for categories we will not display

* performance improvements for categorical metadata handling
 2018-10-22 09:56:41 -07:00
Bruce Martin
5dea303bcd handle case of excessively large number of options in categorical met… (#350) 
* handle case of excessively large number of options in categorical metadata
* move max category options count into globals
 2018-10-18 18:07:39 -07:00
Bruce Martin
2616b5c185 finish tests for world (#340) 
* Create Release_Validation_Recipe.md

* nameCreators test and better error handling

* add test for createObsDimensionMap

* add last set of tests for world module
 2018-10-18 09:54:57 -07:00
Bruce Martin
f9f43c42c0 more lint - components (#336) 
* more lint

* fix typo introduced in delinting

* more lint

* remove dead code

* lint fixes

* lint
 2018-10-17 07:17:51 -07:00
Colin Megill
952578680a Remove heatmap, add diffexp info to histograms (#339) 
* Create Release_Validation_Recipe.md

* compose middle ware for redux devtools

* update package.json and lock

* remove heatmap, add to left side bar

* redux devtools extension
 2018-10-16 16:29:20 -07:00
Bruce Martin
76ec29734a Performance work (#334) 
* range encode filter range lists

* speed up data load

* add comment on scanpy read params

* update to latest scanpy/anndata

* performance improvments in data loading

* fix typo

* work around scanpy bug

* remove debugging print statements
 2018-10-16 15:49:40 -07:00
Bruce Martin
6b0aafd27c package dependency cleanup (#330) 
* update npm packages.  babel 7, redux 4, etc

* remove obsolete babel config file

* use correct icons
 2018-10-15 17:36:13 -07:00
Colin Megill
e7642e6a8f remove log 2018-10-15 11:20:52 -07:00
Colin Megill
8114d7565a dispose and delete 2018-10-15 11:20:52 -07:00
Colin Megill
8e08534d42 user defined gene 2018-10-15 11:20:52 -07:00
Colin Megill
2b77f8146b namespacing 2018-10-15 11:20:52 -07:00
Colin Megill
e1a437514e clean up log 2018-10-15 11:20:52 -07:00
Colin Megill
48fa221ad9 diffexp, regraph, brush 2018-10-15 11:20:52 -07:00
Colin Megill
fff331e1f0 stub additional validation for gene name 2018-10-15 11:20:52 -07:00
Colin Megill
8d07b400be adding and removing user defined genes 2018-10-15 11:20:52 -07:00
Colin Megill
5b2c07f105 clear differential reducer 2018-10-15 11:20:52 -07:00
Colin Megill
ca35ae0b40 cleanup in histogram 2018-10-15 11:20:52 -07:00
Colin Megill
1cf9fc76b0 break out differential genes from user defined 2018-10-15 11:20:52 -07:00
Colin Megill
a42f9f83f5 clear differential expression button interface 2018-10-15 11:20:52 -07:00
Colin Megill
9de44e6fd4 clear differential expression reducer 2018-10-15 11:20:52 -07:00
Colin Megill
ca37483447 remove old heatmap webgl code 2018-10-15 11:20:52 -07:00
Colin Megill
dd1b9229fc access varDataCache with kvCache.get 2018-10-15 11:20:52 -07:00
Colin Megill
73f55cb9f8 obs index to index 2018-10-15 11:20:52 -07:00
Colin Megill
8aa75458ed brushable histogram renders genes 2018-10-15 11:20:52 -07:00
Colin Megill
0c8f4ed824 rename to createVarDimension 2018-10-15 11:20:52 -07:00
Colin Megill
5165297e2a position tweak 2018-10-15 11:20:52 -07:00
Colin Megill
9c8e0e76ad remove export 2018-10-15 11:20:52 -07:00
Colin Megill
693dc7be12 switch to roboto condensed for space 2018-10-15 11:20:52 -07:00
Colin Megill
090bad040e worldIndex returns NaN 2018-10-15 11:20:52 -07:00
Colin Megill
a297956e69 add world helper method for var 2018-10-15 11:20:52 -07:00
Colin Megill
b0603dbed7 create dimension for arbitrary gene 2018-10-15 11:20:52 -07:00
Colin Megill
30069c0e66 export request genes action for use from components 2018-10-15 11:20:52 -07:00
Colin Megill
2c74291ee9 add gene expression section to left sidebar 2018-10-15 11:20:52 -07:00
Bruce Martin
329cf64a49 remove webpack hot load, react hot load and react redbox (#326) 
Fixes #176 and #290
 2018-10-15 08:47:15 -07:00
Bruce Martin
c7e6f54450 cleanup middleware pre-ship (mostly lint) (#329) 
Fixes #180

URL middleware unused, but retained in expectation that we will need it shortly.
Fixed a bit of lint, mostly by reformatting or commenting out currently unused code.
 2018-10-15 08:45:34 -07:00
Bruce Martin
aea934bb6d remove dead code and lint (#310) 
remove dead code from client/src/frameworks
delint various files
 2018-10-10 18:04:43 -07:00