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bot/88e3f7da32ff4d269d8486ac4f135dd1

colinmegill/#632

dependabot/npm_and_yarn/client/browserslist-4.28.9

dependabot/npm_and_yarn/client/joi-17.13.7

dependabot/npm_and_yarn/client/js-yaml-3.15.2

dependabot/npm_and_yarn/client/nanoid-3.3.18

dependabot/npm_and_yarn/client/svgo-2.8.4

kaloster/flakey-tests

kaloster/python-312-test

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Mono Color

• 03d7a107bf Fix for s3 region name in data locator (#1316) bmccandless 2020-03-29 09:20:34 -07:00
• c8f98917c5 tos prompt (#1313) Bruce Martin 2020-03-28 23:31:19 -06:00
• 8fac40b6ae various fixes for s3fs use (#1312) Bruce Martin 2020-03-28 23:26:03 -06:00
• 54a75ffd7e Add support to include static files into the eb deployment (#1305) bmccandless 2020-03-26 15:03:37 -07:00
• 8c0480b0bc Added a config hook for secret key into the app. (#1304) bmccandless 2020-03-26 15:03:08 -07:00
• a398f85ccc turn off auto-reload in debug mode (#1301) Bruce Martin 2020-03-26 14:34:56 -06:00
• 57938b487b remove static route redirects / bump static to top level (#1299) Bruce Martin 2020-03-26 11:45:10 -06:00
• 40c2e4c164 Change route to the datasets (#1302) bmccandless 2020-03-26 10:35:17 -07:00
• adf7010f50 Add TOS and Privacy url via config (#1300) Colin Megill 2020-03-26 11:33:41 -04:00
• 91e17e64a5 Fixes for static_rewrite.config (#1298) bmccandless 2020-03-25 17:44:15 -07:00
• 26605049a4 Various hardening to REST routes (#1293) Bruce Martin 2020-03-25 17:14:52 -06:00
• 7b53209ae3 Fix a deadlock when an exception is thrown during matrix validate/open (#1296) bmccandless 2020-03-25 15:49:49 -07:00
• 674f14f9bd harden dataset name handling (#1297) Bruce Martin 2020-03-25 16:37:06 -06:00
• e07ebf85e8 Small documentation fix in prepare (#1292) Matt Weiden 2020-03-25 14:38:07 -07:00
• 5ec66c5b0e Avoid race condition in the matrix cache handling. (#1280) bmccandless 2020-03-24 12:23:47 -07:00
• bea1836386 hosted cellxgene, add an environment variable to specify the config file (#1288) bmccandless 2020-03-24 11:43:35 -07:00
• 752b9e4ab3 CORS and CSP headers (#1286) Bruce Martin 2020-03-24 09:05:37 -06:00
• d196cbc8f6 do in-app compression only for CLI (#1285) Bruce Martin 2020-03-24 07:36:40 -06:00
• 96b092f0eb fix health root exception (#1283) Bruce Martin 2020-03-23 16:13:32 -06:00
• 785bf5b5bc update for the legal configuration options (#1281) bmccandless 2020-03-23 13:25:17 -07:00
• b249df9036 add/fix label tooltips (#1278) Severiano Badajoz 2020-03-23 10:28:54 -07:00
• d99b84ba09 prepare - work around anndata bug (#1260) Bruce Martin 2020-03-22 13:27:59 -06:00
• db7a485796 tighten up error reporting (#1269) Bruce Martin 2020-03-22 10:55:47 -06:00
• 8180be83b8 Introduce a config file to cellxgene (#1264) bmccandless 2020-03-22 09:34:11 -07:00
• 1351c8f724 restrict methods on all endpoints (#1271) Bruce Martin 2020-03-22 09:23:28 -06:00
• c4731d52e2 target blank (#1254) Colin Megill 2020-03-20 20:07:51 -04:00
• de006f8f91 initial implementation of a health check route (#1262) Bruce Martin 2020-03-20 15:21:32 -06:00
• 040dbd3a95 refine load test (#1257) Bruce Martin 2020-03-20 15:09:12 -06:00
• 8f09a4b1bc JS package fixes (#1248) Bruce Martin 2020-03-18 20:00:28 -06:00
• e4bf65c54a Improve hosted cellxgene (#1234) bmccandless 2020-03-18 16:21:03 -07:00
• 38c4ecac8c locust load test script (#1244) Bruce Martin 2020-03-18 12:27:07 -06:00
• 8a733270d7 fixes for hosted cellxgene (#1227) bmccandless 2020-03-16 09:47:01 -07:00
• 86cbe64ae8 Add color mapping to the bar chart (#1218) Matt Weiden 2020-03-14 15:24:52 -07:00
• 1e8d89f8f2 refinements for 0.15 (#1226) Bruce Martin 2020-03-13 17:30:47 -06:00
• 9c2f57df39 bump version to 0.15.0 (#1222) 0.15.0 Severiano Badajoz 2020-03-13 13:11:12 -07:00
• 9bc83fdd02 update contributor process recommendations (#1213) Bruce Martin 2020-03-13 12:41:30 -06:00
• bbfd2e5ac5 Add a simple annotations cache to the server (#1220) bmccandless 2020-03-12 20:06:44 -07:00
• f28bd52d79 fix performance regression caused by excessive rendering (#1219) Bruce Martin 2020-03-12 16:05:08 -06:00
• 63f1f38f7c use AnchorButton so the tooltip dismisses (#1217) Bruce Martin 2020-03-12 09:36:36 -06:00
• 3ba4cf4483 fix bug created from master rebase (#1216) Severiano Badajoz 2020-03-11 15:20:20 -07:00
• a862f2b2a4 Further refine compatibility tests (#1215) Matt Weiden 2020-03-11 14:16:05 -07:00
• 3bf72829c2 pass empty coordinates when a continuous annotation is colored (#1212) Severiano Badajoz 2020-03-11 13:01:14 -07:00
• 7cd9a0032a optimize centroid util (#1147) Severiano Badajoz 2020-03-11 12:35:42 -07:00
• 9089fc98f2 annotations cli updates (#1190) Sidney Bell 2020-03-11 11:57:52 -07:00
• 8beeb57c96 Use DataLocator consistently on backend (#1208) Bruce Martin 2020-03-10 20:12:49 -06:00
• 234f25b782 Conditionally truncate category string (#1206) Colin Megill 2020-03-10 21:14:26 -04:00
• 28ddb60b2f update JS deps (#1203) Bruce Martin 2020-03-10 11:59:12 -06:00
• 1a93068810 Prevent category collapsing on annotation edit, # of cells on add label button (#1204) Colin Megill 2020-03-10 13:21:06 -04:00
• d8231a9a3b Fixes to compatibility tests (#1205) Matt Weiden 2020-03-10 08:19:36 -07:00
• ffdcc24a40 remove pinned tables dependency (#1202) Bruce Martin 2020-03-10 08:47:54 -06:00
• 023a73cab8 smoke-test centroids + graph overlay layer (#1189) Severiano Badajoz 2020-03-09 17:01:22 -07:00
• 144b19c449 experimental re-embedding (#1186) Bruce Martin 2020-03-09 17:53:30 -06:00
• b3e9719602 hosted cellxgene (#38) (#1200) bmccandless 2020-03-09 12:08:07 -07:00
• bdd69160e2 Do not over-prune var data cache (#1198) Matt Weiden 2020-03-05 18:04:14 -08:00
• bddf66d62a Use blueprint "disable" property to indicate disabled buttons (#1197) Matt Weiden 2020-03-05 09:46:41 -08:00
• 7b77bf4bdd Make smoke tests faster, more stable (#1195) Matt Weiden 2020-03-04 16:11:32 -08:00
• cc890fe391 fix url launching on Heroku deployments (#1196) Severiano Badajoz 2020-03-04 13:05:11 -08:00
• 62e944796b enable camera interaction on centroids (#1160) Severiano Badajoz 2020-03-04 11:31:30 -08:00
• 1547a864c2 Disable ColorBy button for truncated categories (#1191) Matt Weiden 2020-03-04 09:19:12 -08:00
• 05323ae643 Undo selection appends genes from differential expression to user gene list (#1183) Matt Weiden 2020-03-02 12:07:12 -08:00
• 87efcc0e99 Fix a few bugs from server refactor (#1188) bmccandless 2020-03-02 11:55:57 -08:00
• bf7d7342d5 Improve label picking (#1179) Bruce Martin 2020-02-28 15:46:40 -07:00
• 1e4381ab7f Make the Clip button primary (blue) (#1181) Matt Weiden 2020-02-26 16:54:30 -08:00
• 8b0adcdfcc Add codecov configuration (#1180) Matt Weiden 2020-02-26 14:57:46 -08:00
• 0043308b52 add centroid util unit tests (#1172) Severiano Badajoz 2020-02-26 12:16:13 -08:00
• 8a62c9f027 Add undo/redo smoke tests for annotations (#1175) Matt Weiden 2020-02-26 12:10:03 -08:00
• ded35c7252 Spelling fix in Compatibility Test workflow (#1178) Matt Weiden 2020-02-26 11:12:16 -08:00
• 46876e2fb1 Fix various bugs with CXG format at annotations (#1173) bmccandless 2020-02-24 18:19:39 -08:00
• 7bc58bba2b undo/redo cleanup (#1165) Bruce Martin 2020-02-24 18:51:26 -07:00
• 5c70cc5bcd Add codecov for code coverage of python and javascript (#1170) Matt Weiden 2020-02-24 17:13:16 -08:00
• 281154f591 Add exclusions to flake8 config (#1169) Matt Weiden 2020-02-24 08:33:25 -08:00
• c7f2032dd7 Add user-generated annotations tests to the server (#1164) Matt Weiden 2020-02-23 15:32:13 -08:00
• fb1f0c6469 fix latent crossfilter bug (#1162) Bruce Martin 2020-02-21 14:14:41 -07:00
• d2bae0c4f6 CXG creator and dataset parameters (#1163) Bruce Martin 2020-02-21 12:49:45 -07:00
• 907cc634f5 server refactor (#1140) bmccandless 2020-02-19 10:22:35 -08:00
• 349c413d8b anndata X indexing & version compatibility improvements (#1157) Bruce Martin 2020-02-19 09:57:51 -07:00
• c630be33df Simplify CI checks on git push, add nightly checks on cron (#1158) Matt Weiden 2020-02-18 11:57:19 -08:00
• d30087ca63 Add frontend smoke tests for annotations (#1154) Matt Weiden 2020-02-14 17:23:45 -08:00
• ac13b31e13 Collect all env vars in one, easy-to-find place (#1149) Matt Weiden 2020-02-12 12:50:48 -08:00
• 5340a5f951 graph overlay improvements (#1141) Severiano Badajoz 2020-02-12 10:56:41 -08:00
• e770db1e2c load annotations incrementally (#1107) Bruce Martin 2020-02-10 11:22:27 -08:00
• 1c9b9f6a08 js package dep update (#1145) Bruce Martin 2020-02-05 13:11:05 -08:00
• 2ad0ade449 release 0.14.1 0.14.1 bkmartinjr 2020-01-31 14:13:03 -08:00
• cae93012cb fix state prop bug with camera transform (#1138) Bruce Martin 2020-01-31 12:13:35 -08:00
• 3afc03b95b fix state prop bug with camera transform (#1138) Bruce Martin 2020-01-31 12:13:35 -08:00
• a927d733c2 [WIP] Patch for anndata 0.7 (#1132) Sidney Bell 2020-01-28 16:12:43 -08:00
• 3dd50e5676 Version bump to 0.14.0 0.14.0 Matt Weiden 2020-01-27 16:18:19 -08:00
• 588ddc103a Remove extra version replacement (#1133) Matt Weiden 2020-01-27 16:07:55 -08:00
• 9bdcf44564 Separate ontologies dialogue (#1126) Colin Megill 2020-01-27 15:10:57 -05:00
• 8b8a800453 Undo feature: fix case where previous state has no state filter (#1124) Matt Weiden 2020-01-27 08:29:41 -08:00
• d48647a655 Ontologies (#1110) Colin Megill 2020-01-23 17:04:17 -05:00
• 8d725b1ad9 centroid labels (#872) Severiano Badajoz 2020-01-22 13:40:22 -08:00
• 69c639b14d pin anndata to 0.6.22post1 (#1122) Bruce Martin 2020-01-22 13:23:05 -08:00
• 431c8bdabc disable magic nan parsing in read_csv (#1115) Bruce Martin 2020-01-17 09:26:15 -08:00
• 2832393f40 Make diffexp docs more specific (#1083) Sidney Bell 2020-01-16 15:44:10 -08:00
• 8b329630f8 fix for issue 1112 - all user annotation category names must be unique across all obs annotatoins (#1114) Bruce Martin 2020-01-16 09:28:29 -08:00
• 30f3ce49e4 update JS dependencies (#1106) Bruce Martin 2020-01-15 17:11:51 -08:00
• ddbfc458d7 Remove d3 dependency in crossfilter (#1108) Matt Weiden 2020-01-14 13:46:53 -08:00
• 124254d5ed typo Sidney Bell 2020-01-13 10:55:53 -08:00
• 677433bbf5 Fix label sorting bugs (#1102) Bruce Martin 2020-01-09 13:34:25 -08:00