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Charlotte Weaver 28d341cf1c Fix default path for dataset
2018-07-17 16:03:06 -07:00
__tests__/util
more Jest tests for TypedCrossfilter
2018-05-30 10:35:49 -07:00
bin
flake8/lint cleanup
2018-07-12 11:52:24 -07:00
client
Merge branch 'master' into webgl-pause
2018-07-16 11:10:51 -07:00
example-dataset
Add example dataset
2018-07-06 16:03:24 -07:00
server
Fix default path for dataset
2018-07-17 16:03:06 -07:00
.gitignore
Add client build script
2018-07-06 15:59:20 -07:00
LICENSE.txt
initial commit
2017-08-23 16:28:01 -07:00
MANIFEST.in
Initial packaging working
2018-07-16 11:48:53 -07:00
README.md
Updated readme for python packaged version
2018-07-16 14:20:50 -07:00
setup.py
Added entry point to run cellxgene from console
2018-07-10 12:56:42 -07:00

README.md

cellxgene

A React + Redux web application for exploring large scale single cell RNA sequence data.

Requirements

  • OS: OSX, Windows, Linux
  • python 3.6
  • npm
  • Google Chrome

Installation

clone project

git clone https://github.com/chanzuckerberg/cellxgene.git

install client

cd cellxgene
./bin/build-client

To use with virtual env for python (optional, but recommended)

python3 -m venv <env name>
source <env name>/bin/activate

install server

python setup.py install

run (with demo data)

cellxgene

Thanks to Alex Wolf his help with test data

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Description
An interactive explorer for single-cell transcriptomics data
datavizscientificscrna-seqtranscriptomicsvisualization
Readme MIT 729 MiB
Languages
JavaScript 68.4%
Python 30.1%
Makefile 0.7%
HTML 0.4%
CSS 0.2%