cellxgene/docs/index.md

cellxgene

cellxgene is an interactive data explorer for single-cell transcriptomics data designed to handle large datasets (1 million cells or more) and integrate with your favorite analysis tools

getting started

install the package

> pip install cellxgene

preprocess the data for use with cellxgene (optional)

> cellxgene --prepare dataset.h5ad -o processed.h5ad

launch the web app

> cellxgene --launch processed.h5ad

features

help and contact

Have questions, suggestions, or comments? You can come hang out with us by joining the CZI Science Slack and posting in the #cellxgene-users channel. As mentioned above, please submit any feature requests or bugs as Github issues. We'd love to hear from you!