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https://github.com/lh3/minimap2.git
synced 2026-09-23 05:08:12 +08:00
disable k-mer intersection for now
My current focus is long-read mapping. This functionality is not needed right now.
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@@ -89,7 +89,7 @@ static void mm_dust_minier(mm128_v *mini, int l_seq, const char *seq, int sdust_
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}
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mini->n = k;
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}
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#if 0
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int mm_pair_thin_core(mm_tbuf_t *b, uint64_t x, int radius, int rel, int st0, int n, const uint64_t *z, uint64_v *a)
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{
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int i, st = st0, en = n, mid = en - 1;
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@@ -154,7 +154,7 @@ void mm_pair_thin(mm_tbuf_t *b, int radius, mm_match_t *m1, mm_match_t *m2)
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m[i]->n = a[i].n, m[i]->x.r = a[i].a, m[i]->is_alloc = 1;
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// printf("%d,%d; %d,%d\n", m[0]->qpos>>1, m[1]->qpos>>1, m[0]->n, m[1]->n);
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}
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#endif
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mm_reg1_t *mm_gen_reg(int qlen, int n_u, uint64_t *u, mm128_t *a)
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{
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mm_reg1_t *r;
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