Heng Li 372698bb23 disable k-mer intersection for now ...

My current focus is long-read mapping. This functionality is not needed right now.

2017-06-11 14:13:41 -04:00

.gitignore

make sdust working with kalloc

2017-04-06 15:51:36 -04:00

bseq.c

index can be compiled; not tested yet

2017-04-07 15:30:30 -04:00

bseq.h

index can be compiled; not tested yet

2017-04-07 15:30:30 -04:00

chain.c

fixed a bug

2017-06-07 11:40:13 -04:00

index.c

fixed a bug in chaining

2017-06-06 14:33:43 -04:00

kalloc.c

fixed a few memory leaks

2017-04-13 23:05:19 -04:00

kalloc.h

Homopolymer-compressed k-mer sketch

2017-04-06 15:37:34 -04:00

kdq.h

make sdust working with kalloc

2017-04-06 15:51:36 -04:00

khash.h

index can be compiled; not tested yet

2017-04-07 15:30:30 -04:00

kseq.h

Homopolymer-compressed k-mer sketch

2017-04-06 15:37:34 -04:00

ksort.h

chaining

2017-05-03 20:47:29 +08:00

kthread.c

index can be compiled; not tested yet

2017-04-07 15:30:30 -04:00

kthread.h

index can be compiled; not tested yet

2017-04-07 15:30:30 -04:00

kvec.h

Homopolymer-compressed k-mer sketch

2017-04-06 15:37:34 -04:00

main.c

r36: bring back primary; don't output all mappings

2017-06-08 15:28:19 -04:00

Makefile

backup

2017-06-06 10:16:33 -04:00

map.c

disable k-mer intersection for now

2017-06-11 14:13:41 -04:00

minimap.h

r36: bring back primary; don't output all mappings

2017-06-08 15:28:19 -04:00

misc.c

sort positions in each bucket

2017-04-12 13:31:12 -04:00

mmpriv.h

minor tweaks

2017-06-06 15:31:21 -04:00

sdust.c

fixed memory leaks

2017-06-06 21:45:55 -04:00

sdust.h

fixed a few memory leaks

2017-04-13 23:05:19 -04:00

sketch.c

wrong HPC

2017-05-04 17:45:19 +08:00

S

Description

A versatile pairwise aligner for genomic and spliced nucleotide sequences

bioinformaticsgenomicssequence-alignmentspliced-alignment

11 MiB

Languages

C 61.3%

JavaScript 16.6%

TeX 15.9%

Roff 2.9%

Cython 1.7%

Other 1.5%