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check hardware support for avx2/512

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Saurabh
2021-06-29 19:18:22 -04:00
committed by Heng Li
parent 448341c96c
commit 6da640e551
2 changed files with 2 additions and 2 deletions
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align.c
+1 -1
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@@ -364,7 +364,7 @@ static void mm_align_pair(void *km, const mm_mapopt_t *opt, int qlen, const uint
else if (opt->q == opt->q2 && opt->e == opt->e2)
ksw_extz2_sse(km, qlen, qseq, tlen, tseq, 5, mat, opt->q, opt->e, w, zdrop, end_bonus, flag, ez);
else{
#ifdef ALIGN_AVX
#ifdef ALIGN_AVX && (__AVX512BW__ || __AVX2__)
#ifdef __AVX512BW__
ksw_extd2_avx512(km, qlen, qseq, tlen, tseq, 5, mat, opt->q, opt->e, opt->q2, opt->e2, w, zdrop, end_bonus, flag, ez);
#elif __AVX2__
chain.c
+1 -1
View File
@@ -68,7 +68,7 @@ mm128_t *mm_chain_dp(int max_dist_x, int max_dist_y, int bw, int max_skip, int m
t = (int32_t*)kmalloc(km, n * 4);
v = (int32_t*)kmalloc(km, n * 4);
memset(t, 0, n * 4);
#if VECTORIZED_CHAINING
#if VECTORIZED_CHAINING && (__AVX512BW__ || __AVX2__)
anchor_t* anchors = (anchor_t*)malloc(n* sizeof(anchor_t));
for (i = 0; i < n; ++i) {
uint64_t ri = a[i].x;