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Update README.md

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Vasimuddin Md
2021-11-29 14:23:58 +05:30
committed by Heng Li
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@@ -40,7 +40,7 @@ The output generated by minimap2 and mm2-fast should match.
```sh
diff minimap2_output mm2-fast_output > diff_result
```
The file ```diff_result``` should empty, meaning a difference of 0 lines.
The file ```diff_result``` should be empty, meaning a difference of 0 lines.
### Advanced options
The default compilation using make applies two optimizations: vectorized chaining and sequence alignment. The learned-indexes based seeding is disabled by default as it requires availability of [Rust](https://en.wikipedia.org/wiki/Rust_(programming_language)). This is because the learned hash-table uses an external training library that runs on Rust. Rust is trivial to install, see https://rustup.rs/ and add its path to .bashrc file. Rust installation only takes a few seconds. Following are the steps to enable learned hash table optimization in mm2-fast: