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fast-contrib
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963 Commits

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Author SHA1 Message Date
Saurabh
d6e6811a0f Estimated installation time 2021-08-10 12:55:07 -04:00
Saurabh
b385748c40 Readme with links to 100K read datasets 2021-08-06 11:20:52 -04:00
Saurabh
7339801629 Readme missing preset - fixed 2021-08-04 16:01:33 -04:00
Saurabh
7fd30e15b8 Final README version 2021-08-04 16:01:33 -04:00
Saurabh
4df2d259ee updated README 2021-08-04 16:01:33 -04:00
Chirag Jain
9cabb4a2b9 Update README.md 2021-08-04 16:01:33 -04:00
Chirag Jain
a5c14dd5f9 Update README.md 2021-08-04 16:01:33 -04:00
Chirag Jain
38075e82cc Update README.md 2021-08-04 16:01:33 -04:00
Chirag Jain
1ee40b0c32 Update README.md 2021-08-04 16:01:33 -04:00
Saurabh
b403cf3e6f Updated README 2021-08-04 16:01:33 -04:00
Saurabh
84b1c201c8 Updated README 2021-08-04 16:01:33 -04:00
Saurabh
f557d7fbd9 Updated README 2021-08-04 16:01:33 -04:00
Saurabh
4bc645c31d README with avx2/avx512 table 2021-07-20 12:32:34 -04:00
Saurabh
609b430866 README with AVX2 compilation 2021-07-20 12:32:34 -04:00
Saurabh
1c21888e94 Latest TAL 2021-07-20 12:32:34 -04:00
Saurabh
34e273c8ee Default compilation without AVX2 2021-07-20 12:32:34 -04:00
Saurabh
f68b4b22df mm2-fast with avx2 optimizations 2021-06-29 19:18:22 -04:00
Saurabh
e2e494de67 latest TAL module 2021-06-29 19:18:22 -04:00
Saurabh
558be6b729 avx2 implementation for mask_store 2021-06-29 19:18:22 -04:00
Saurabh
6da640e551 check hardware support for avx2/512 2021-06-29 19:18:22 -04:00
Saurabh
448341c96c avx2 support for chaining and alignment 2021-06-29 19:18:22 -04:00
Saurabh
a9ac74ffe1 cleanup 2021-06-16 15:50:17 -04:00
Saurabh
b2ff8fbe92 make multi 2021-06-16 15:50:17 -04:00
Saurabh
0369874d4e mm2-fast: Initial commit 2021-06-16 15:50:17 -04:00
Heng Li
b6ff332de1 Release minimap2-2.18 (r1015) v2.18 2021-04-09 13:33:34 -04:00
Heng Li
77abafaaf3 prepare for release 2021-04-09 13:18:56 -04:00
Heng Li
507d39af15 r1013: changed to a more accurate similarity est 
Based on DOI:10.1101/2021.01.15.426881. One minimap2 reviewer suggested the
right formula to me but I thought the difference would be insignificant. I was
wrong.
 2021-04-08 13:57:53 -04:00
Heng Li
827ca4b461 r1012: fixed an off-by-one bug; resolves #489 2021-04-07 23:31:31 -04:00
Marcus Stoiber
d3dde2fdd4 Convert from spaces to tabs. 2021-04-05 11:55:10 -04:00
Marcus Stoiber
7db2e8d21a Convert python install from build_ext to setuptools setup_requires. 2021-04-05 11:55:10 -04:00
Heng Li
0b41dd26a2 r1009: fixed a compiler warning 2021-04-05 11:43:13 -04:00
Heng Li
2b47846cd6 r1008: don't parse space in BED 2021-04-05 11:41:00 -04:00
Heng Li
67dd906a80 bump travis python version to 3.9 2021-03-23 09:12:49 -04:00
Heng Li
1b0bb7b0ba require overlap ratio when considering centromere 2021-03-11 19:11:44 -05:00
Heng Li
1c4b7e8a48 explained --junc-bed in README 2021-03-06 19:44:24 -05:00
Heng Li
ecbc399fa2 improved sveval 2021-03-06 19:44:13 -05:00
Heng Li
4dfd495cc2 added sveval 2021-02-15 14:49:36 -05:00
Heng Li
194b457e79 option to print errors only 2021-02-07 12:58:03 -05:00
Heng Li
75c8933511 evaluate large-scale misjoins 2021-02-07 12:34:13 -05:00
Heng Li
1025993469 print number of errors on each read 2021-01-29 14:08:21 -05:00
Heng Li
a3253d1a6b added a command for simple VCF statistics 2021-01-14 12:24:38 -05:00
Heng Li
2da649d1d7 Merge remote-tracking branch 'origin/master' 2020-11-15 18:47:15 -05:00
Heng Li
f995f55610 added --mask-len for #659 2020-08-21 11:12:50 -04:00
Armin Töpfer
c9874e2dc5 Initialize r->p if ez->zdropped 2020-06-12 09:22:18 -04:00
Heng Li
ccb0f7b05d added a new Makefile for simde 2020-04-25 22:43:29 -04:00
mbrcic
66db9da7d8 changed preprocessor conditionals for SIMDe 2020-04-22 19:50:59 +02:00
mbrcic
2b3403f094 fix for Neon after test. 2020-04-21 02:08:21 +02:00
mbrcic
3e16e4e39d Added documentation entry for added functionality, simde and no_simd. 2020-04-21 01:36:19 +02:00
mbrcic
f47e8a525e SIMDe made optional. Include paths changes for SIMDe. 2020-04-21 01:08:32 +02:00
mbrcic
c172df7d2d fix for Neon 2020-04-20 21:14:15 +02:00