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• 736301fa6b Updated the manpage Heng Li 2021-11-18 17:28:31 -05:00
• d0cff3eb36 Release minimap2-2.23 (r1111) v2.23 Heng Li 2021-11-18 17:11:48 -05:00
• ac334639ce r1110: default --cap-kalloc=1g; test more inv Heng Li 2021-10-11 14:45:15 -04:00
• 546623dcb4 r1109: disable chain_skip_scale by default Heng Li 2021-10-04 21:24:35 -04:00
• 39bdd45875 r1108: fixed missing inversions for #816 and #806 Heng Li 2021-10-04 16:34:30 -04:00
• aefa2c0d86 added --chain-skip-scale Heng Li 2021-10-01 16:58:03 -04:00
• 7ee62dae1d updated manuscript Heng Li 2021-10-01 11:42:36 -04:00
• 05a8a45d44 r1105: avoid long running time occasionally (#771) Heng Li 2021-08-15 19:43:01 -04:00
• d6e6811a0f Estimated installation time fast-contrib Saurabh 2021-08-09 21:37:29 -07:00
• cc14d1afdf fixed typos Heng Li 2021-08-08 11:18:02 -04:00
• bb3048b2a0 removed one extra sentence Heng Li 2021-08-07 16:55:02 -04:00
• 5113ca2628 improved manuscript Heng Li 2021-08-07 16:01:15 -04:00
• 7358a1ead1 Release minimap2-2.22 (r1101) v2.22 Heng Li 2021-08-07 11:30:31 -04:00
• 32f552957e Merge remote-tracking branch 'remotes/origin/master' Heng Li 2021-08-07 10:40:02 -04:00
• a05edfa5ec a different ending sentence dev Heng Li 2021-08-07 10:38:48 -04:00
• 8e81145817 finished the first draft Heng Li 2021-08-07 00:33:31 -04:00
• e37f5ffe39 finished results Heng Li 2021-08-07 00:06:28 -04:00
• 8a1d52bcbe r1094: for --split-prefix update max_dp at the end Heng Li 2021-08-06 21:40:43 -04:00
• f7271a7c24 expose mapQ threshold to command line of pafcmp Heng Li 2021-08-06 19:41:46 -04:00
• 70393eb46e minimap2 update manuscript Heng Li 2021-08-06 19:41:17 -04:00
• b385748c40 Readme with links to 100K read datasets Saurabh 2021-08-06 08:05:36 -07:00
• 9d049f0562 added pafcmp Heng Li 2021-08-05 12:41:21 -04:00
• 5180b70ff3 r1090: log wall-clock time for each read Heng Li 2021-08-04 17:45:09 -04:00
• 2392e54fe2 r1089: fixed an unusual memory leak (#749) Heng Li 2021-08-04 17:07:00 -04:00
• 629c11728e output the number of mismatches Heng Li 2021-08-04 17:05:06 -04:00
• 7339801629 Readme missing preset - fixed Saurabh 2021-08-04 04:26:28 -07:00
• 7fd30e15b8 Final README version Saurabh 2021-08-04 03:47:05 -07:00
• 4df2d259ee updated README Saurabh 2021-08-04 03:35:10 -07:00
• 9cabb4a2b9 Update README.md Chirag Jain 2021-08-04 14:35:47 +05:30
• a5c14dd5f9 Update README.md Chirag Jain 2021-08-04 14:22:38 +05:30
• 38075e82cc Update README.md Chirag Jain 2021-08-04 14:11:24 +05:30
• 1ee40b0c32 Update README.md Chirag Jain 2021-08-04 13:54:29 +05:30
• b403cf3e6f Updated README Saurabh 2021-08-03 21:48:32 -07:00
• 84b1c201c8 Updated README Saurabh 2021-08-03 21:45:33 -07:00
• f557d7fbd9 Updated README Saurabh 2021-08-03 21:17:14 -07:00
• 59488f0271 call mm_idx_destroy at the end of loop to fix memory leak Ryan Lim 2021-07-26 17:48:37 -04:00
• 4bc645c31d README with avx2/avx512 table Saurabh 2021-07-20 09:18:19 -07:00
• 609b430866 README with AVX2 compilation Saurabh 2021-07-19 08:46:23 -07:00
• 1c21888e94 Latest TAL Saurabh 2021-07-19 04:00:48 -07:00
• 34e273c8ee Default compilation without AVX2 Saurabh 2021-07-19 02:40:06 -07:00
• 7e33fde82b dev-r1087: added --cap-kalloc Heng Li 2021-07-19 21:20:04 -04:00
• c4fe52fb07 reduced the default -l and -b Heng Li 2021-07-19 17:25:11 -04:00
• ead1cfbaca output for binning Heng Li 2021-07-19 14:56:33 -04:00
• 83a535f148 dev-r1084: fixed flag integer overflow Heng Li 2021-07-19 11:52:18 -04:00
• f3af29a8aa don't add a new command Heng Li 2021-07-19 10:57:48 -04:00
• cf7eaef367 refactor and prepare for a new command Heng Li 2021-07-19 00:36:17 -04:00
• 2411887d8e rename Heng Li 2021-07-19 00:30:16 -04:00
• 1a8373bb84 dev-r1080: fixed negative dp_max Heng Li 2021-07-18 21:07:14 -04:00
• 161ae7ff73 dev-r1079: per-read error rate Heng Li 2021-07-18 20:38:53 -04:00
• 8a6edab847 dev-r1078: decoupling ranking penalty Heng Li 2021-07-18 16:22:48 -04:00
• 15118dd521 output #mismatches/#dels/#ins in view Heng Li 2021-07-18 15:13:40 -04:00
• 2546999639 dev-r1076: log gap penalty Heng Li 2021-07-17 18:23:59 -04:00
• 52fafe0fed updated pbsim to pbsim2 Heng Li 2021-07-17 18:18:26 -04:00
• 5f449c5cae fixed potential integer overflows Heng Li 2021-07-16 17:20:05 -04:00
• b046052d82 Merge branch 'master' into utec Heng Li 2021-07-16 13:32:47 -04:00
• 5cc3d2239f missing target object files from Makefile.simde to fix issue #779 Jason Stajich 2021-07-06 22:57:07 -07:00
• a3337c09f1 updated the manpage to v2.21 Heng Li 2021-07-07 11:38:14 -04:00
• 581f2d7123 Release minimap2-2.21 (r1071) v2.21 Heng Li 2021-07-06 13:18:55 -04:00
• 52dbd439bc r1080: re-versioning Heng Li 2021-07-02 20:26:13 -04:00
• 260a68d232 Use #defines for CIGAR operators in C code John Marshall 2021-04-10 12:49:39 +01:00
• 177eef259d Use the full MIDNSHP=X string whenever printing CIGAR strings John Marshall 2021-04-09 19:34:53 +01:00
• 459ce04c84 r1069: fixed a regression in comparison to v2.18 Heng Li 2021-07-02 11:45:21 -04:00
• e6cce019e4 r1068: fixed a bug caused by 3f71478 Heng Li 2021-06-30 19:20:06 -04:00
• f68b4b22df mm2-fast with avx2 optimizations Saurabh 2021-06-29 10:15:58 -07:00
• e2e494de67 latest TAL module Saurabh 2021-06-29 08:59:06 -07:00
• 558be6b729 avx2 implementation for mask_store Saurabh 2021-06-28 23:44:48 -07:00
• 6da640e551 check hardware support for avx2/512 Saurabh 2021-06-26 10:20:55 -07:00
• 448341c96c avx2 support for chaining and alignment Saurabh 2021-06-26 10:08:37 -07:00
• 81b3da7677 updated the manpage Heng Li 2021-06-26 19:29:14 -04:00
• a9ac74ffe1 cleanup Saurabh 2021-06-16 10:47:25 -07:00
• b2ff8fbe92 make multi Saurabh 2021-06-16 00:39:09 -07:00
• 0369874d4e mm2-fast: Initial commit Saurabh 2021-06-14 22:05:08 -07:00
• 7025b0b941 Merge branch 'master' of github.com:lh3/minimap2 Heng Li 2021-06-16 10:18:40 -04:00
• fe6a0bb337 r1064: fixed another uninitialized condition Heng Li 2021-06-16 10:16:36 -04:00
• 3f7147864b r1063: fixed an uninitialized access (#752) Heng Li 2021-06-16 09:27:30 -04:00
• c83589b9ea Update README.md Torsten Houwaart 2021-06-07 15:31:58 +02:00
• ce7a59f412 Fixed a typo in README Heng Li 2021-05-27 15:43:04 -04:00
• 15471bd629 Release minimap2-2.20 (r1061) v2.20 Heng Li 2021-05-27 15:26:04 -04:00
• ca19463268 r1060: safer ways to use -rNUM1,NUM2 Heng Li 2021-05-27 10:55:13 -04:00
• 4f8d1bc360 r1059: with --rmq, use the larger bandwidth Heng Li 2021-05-26 23:01:49 -04:00
• 1776c0c645 missing seed.c in setup.py Heng Li 2021-05-26 21:36:09 -04:00
• 9febf532c1 Release minimap2-2.19 (r1057) v2.19 Heng Li 2021-05-26 21:23:42 -04:00
• cec23131e4 fixed a python compilation error Heng Li 2021-05-26 21:20:48 -04:00
• ef09ccf104 Release minimap2-2.19 (r1055) Heng Li 2021-05-26 21:01:03 -04:00
• e74dfd1aa9 r1054: fixed a memory leak Heng Li 2021-05-26 12:32:04 -04:00
• f31705bb4a r1053: made junceval work with PAF Heng Li 2021-05-26 11:54:46 -04:00
• 41d7ccb191 r1052: default -g to 5k Heng Li 2021-05-24 16:46:16 -04:00
• 34a41197d7 r1051: added two internal parameters Heng Li 2021-05-24 16:38:45 -04:00
• 9626b3e716 r1050: -r accepts two bandwidths Heng Li 2021-05-24 16:29:21 -04:00
• 379728726a r1049: removed the long-join heuristics Heng Li 2021-05-24 16:21:40 -04:00
• 4f91558160 r1048: rescue long gaps Heng Li 2021-05-24 16:09:09 -04:00
• ec3bc6efd7 r1047: make gap penalty proportional to k-mer Heng Li 2021-05-24 13:18:17 -04:00
• 8ec8866100 Merge branch 'master' into dev-rmq Heng Li 2021-05-23 21:01:04 -04:00
• 9e7247cff9 sync python with recent changes Heng Li 2021-05-23 21:00:15 -04:00
• cd66777bfb small typo Ariel Erijman 2021-05-19 13:58:14 -04:00
• 5d7d25e92d Merge remote-tracking branch 'origin/master' Heng Li 2021-05-23 13:08:52 -04:00
• 2a3793bbd2 clarify that map-hifi is for HEAD only Heng Li 2021-05-23 13:08:15 -04:00
• f97008a10e Merge branch 'master' into dev-rmq Heng Li 2021-05-20 19:36:33 -04:00
• 10502e2a78 Fixed typo in Readme.md Cornelius Roemer 2021-05-13 17:55:47 +02:00
• 4422c0c6f9 Typo fix in Python README. Don Kirkby 2021-05-14 12:16:12 -07:00