Heng Li 08cbb09fcc r109: changed the default scoring

2017-06-29 20:21:57 -04:00

.gitignore

make sdust working with kalloc

2017-04-06 15:51:36 -04:00

align.c

r108: refactoring, move reg1 routines to hit.c

2017-06-29 19:44:11 -04:00

bseq.c

index can be compiled; not tested yet

2017-04-07 15:30:30 -04:00

bseq.h

index can be compiled; not tested yet

2017-04-07 15:30:30 -04:00

chain.c

backup

2017-06-29 12:58:52 -04:00

format.c

r108: refactoring, move reg1 routines to hit.c

2017-06-29 19:44:11 -04:00

hit.c

r108: refactoring, move reg1 routines to hit.c

2017-06-29 19:44:11 -04:00

index.c

r77: fixed an index loading bug (offset not set)

2017-06-26 13:56:25 -04:00

kalloc.c

number of allocated units must be an even number

2017-06-26 23:15:30 -04:00

kalloc.h

Homopolymer-compressed k-mer sketch

2017-04-06 15:37:34 -04:00

kdq.h

make sdust working with kalloc

2017-04-06 15:51:36 -04:00

khash.h

index can be compiled; not tested yet

2017-04-07 15:30:30 -04:00

kseq.h

Homopolymer-compressed k-mer sketch

2017-04-06 15:37:34 -04:00

ksort.h

chaining

2017-05-03 20:47:29 +08:00

ksw2_extz2_sse.c

backup

2017-06-29 12:58:52 -04:00

ksw2.h

backup

2017-06-29 12:58:52 -04:00

kthread.c

index can be compiled; not tested yet

2017-04-07 15:30:30 -04:00

kthread.h

index can be compiled; not tested yet

2017-04-07 15:30:30 -04:00

kvec.h

Homopolymer-compressed k-mer sketch

2017-04-06 15:37:34 -04:00

main.c

r109: changed the default scoring

2017-06-29 20:21:57 -04:00

Makefile

code refactoring for mm_reg1_t

2017-06-29 19:35:38 -04:00

map.c

r109: changed the default scoring

2017-06-29 20:21:57 -04:00

minimap.h

backup

2017-06-29 11:11:15 -04:00

misc.c

sort positions in each bucket

2017-04-12 13:31:12 -04:00

mmpriv.h

r108: refactoring, move reg1 routines to hit.c

2017-06-29 19:44:11 -04:00

sdust.c

fixed memory leaks

2017-06-06 21:45:55 -04:00

sdust.h

fixed a few memory leaks

2017-04-13 23:05:19 -04:00

sketch.c

wrong HPC

2017-05-04 17:45:19 +08:00

Description

A versatile pairwise aligner for genomic and spliced nucleotide sequences

bioinformaticsgenomicssequence-alignmentspliced-alignment

11 MiB

Languages

C 61.3%

JavaScript 16.6%

TeX 15.9%

Roff 2.9%

Cython 1.7%

Other 1.5%