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Haoyu Cheng
2019-12-26 16:11:29 -05:00
parent 6ddce421ad
commit 10ea89197b
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README.md
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@@ -18,12 +18,9 @@ Hifiasm is a standalone and lightweight assembler, which does not need external
|<sub>[Human NA12878]<sub>|<sub>3Gb<sub>|<sub>x28<sub>|<sub>-k 40 -t 42 -r 2<sub>|<sub>200h<sub>| <sub>5h32m<sub>|<sub>?114G<sub>|<sub>93.5Kb/18.6Mb<sub>|
|<sub>[Human HG002]<sub>|<sub>3Gb<sub>|<sub>x43<sub>|<sub>-k 40 -t 42 -r 2<sub>|<sub>?405h<sub>|<sub>?10h12m<sub>|<sub>?122G<sub>|<sub>320kb/29Mb<sub>|
|<sub>[Human CHM13]<sub>|<sub>3Gb<sub>|<sub>x27<sub>|<sub>-k 40 -t 42 -r 2<sub>|<sub>?<sub>|<sub>?<sub>|<sub>?<sub>|<sub>NA<sup>[2]</sup>/39.8Mb<sub>|
|<sub>[Butterfly]<sub>|<sub>358Mb<sub>|<sub>x35<sub>|<sub>-k 40 -t 42 -r 2 -z 20<sub>|<sub>17.1h<sub>|<sub>36m<sub>|<sub>16G<sub>|<sub>NA<sup>[3]</sup>/7.5Mb<sub>|
|<sub>[Butterfly]<sub>|<sub>358Mb<sub>|<sub>x35<sub>|<sub>-k 40 -t 42 -r 2 -z 20<sub>|<sub>17.1h<sub>|<sub>36m<sub>|<sub>16G<sub>|<sub>7.5Mb/NA<sup>[3]</sup><sub>|
<sub>[1] unitig N50 is the N50 of assembly graph with haplotype information (i.e., bubbles), while the contig N50 is the N50 of haplotype collapsed assembly (i.e., without bubbles).<sub>
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<sub>[2] CHM13 is a homozygous sample, so unitig N50 makes no sense.<sub>
<sub>[3] Butterfly has high heterozygous rate, so most chromosomes have been fully separated into two haplotypes. In this case, contig N50 makes no sense.<sub>