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update README

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chhylp123
2024-10-14 12:30:48 -04:00
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@@ -164,7 +164,7 @@ For the single-sample telomere-to-telomere assembly with Hi-C reads:
```sh
hifiasm -o NA12878.asm -t32 --ul ul.fq.gz --h1 read1.fq.gz --h2 read2.fq.gz HiFi-reads.fq.gz
```
For the trio-binning telomere-to-telomere assembly；
For the trio-binning telomere-to-telomere assembly:
```sh
hifiasm -o NA12878.asm -t32 --ul ul.fq.gz -1 pat.yak -2 mat.yak HiFi-reads.fq.gz
```
@@ -174,7 +174,7 @@ hifiasm -o NA12878.asm -t32 --ul ul.fq.gz -1 pat.yak -2 mat.yak HiFi-reads.fq.gz
For diploid haplotype-resolved genome assembly, hifiasm can further enhance assembly contiguity
by introducing scaffolding. It leverages the assemblies of the two haplotypes to scaffold each other.
Specifically, if there is a gap within the haplotype 1 assembly, hifiasm will use the corresponding
homologous region in haplotype 2 to scaffold haplotype 1. Below is an example using the `--dual-scaf` option:
homologous region in haplotype 2 to scaffold haplotype 1. Below is an example using the `--dual-scaf` option.
```sh
hifiasm -o NA12878.asm -t32 --dual-scaf HiFi-reads.fq.gz
```