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r191: changed the default to -N400 -k51 -w51

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Heng Li
2020-04-04 12:55:19 -04:00
parent 4e3c15ec83
commit 8c27dbb52f
2 changed files with 4 additions and 4 deletions
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CommandLines.cpp
+3 -3
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@@ -64,13 +64,13 @@ void init_opt(hifiasm_opt_t* asm_opt)
asm_opt->pat_index = NULL; asm_opt->pat_index = NULL;
asm_opt->mat_index = NULL; asm_opt->mat_index = NULL;
asm_opt->thread_num = 1; asm_opt->thread_num = 1;
asm_opt->k_mer_length = 41; asm_opt->k_mer_length = 51;
asm_opt->mz_win = 41; asm_opt->mz_win = 51;
asm_opt->bf_shift = 37; asm_opt->bf_shift = 37;
asm_opt->high_factor = 5.0f; asm_opt->high_factor = 5.0f;
asm_opt->no_HPC = 0; asm_opt->no_HPC = 0;
asm_opt->no_kmer_flt = 0; asm_opt->no_kmer_flt = 0;
asm_opt->max_n_chain = 1000; asm_opt->max_n_chain = 400;
asm_opt->k_mer_min_freq = 3; asm_opt->k_mer_min_freq = 3;
asm_opt->k_mer_max_freq = 66; asm_opt->k_mer_max_freq = 66;
asm_opt->load_index_from_disk = 1; asm_opt->load_index_from_disk = 1;
CommandLines.h
+1 -1
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@@ -3,7 +3,7 @@
#include <pthread.h> #include <pthread.h>
#define HA_VERSION "0.3.0-dirty-r190" #define HA_VERSION "0.3.0-dirty-r191"
#define VERBOSE 0 #define VERBOSE 0
#define VERBOSE_GFA 0 #define VERBOSE_GFA 0