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Haoyu Cheng
2019-12-26 15:43:58 -05:00
parent cd2300907a
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README.md
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@@ -13,9 +13,10 @@ Hifiasm is an ultrafast haplotype-resolved de novo assembler based on PacBio Hif
Hifiasm is a standalone and lightweight assembler, which does not need external libraries (except zlib). For large genomes, it can generate high-quality assembly in a few hours. Hifiasm has been tested on the following datasets:
|Dataset |GSize |Cov |Asm options |CPU time |Wall time | RAM|
|:-----------------------|-----:|-------:|:---------------------|--------:|---------:|-------:|
|[Human NA12878] | 3Gb|x28 |-k 40 -t 42 -r 2 | 200h| 5h32m| ?114.1G|
|[Human HG002] | 3Gb|x43 |-k 40 -t 42 -r 2 | ?405h| ?10h12m| ?122.1G|
|[Human CHM13] | 3Gb|x27 |-k 40 -t 42 -r 2 | ?| ?| ?|
|[Butterfly] | 358Mb|x35 |-k 40 -t 42 -r 2 -z 20| 17.1h| 36m| 16.7G|
|Dataset |GSize | Cov | Asm options |CPU time|Wall time| RAM|unitig/contig N50|
|:---------------|-----:|-------:|:---------------------|-------:|--------:|------:|----------------:|
|[Human NA12878] | 3Gb|x28 |-k 40 -t 42 -r 2 | 200h| 5h32m|?114.1G| 93.5Kb/18.6Mb|
|[Human HG002] | 3Gb|x43 |-k 40 -t 42 -r 2 | ?405h| ?10h12m|?122.1G| 320kb/29Mb|
|[Human CHM13] | 3Gb|x27 |-k 40 -t 42 -r 2 | ?| ?| ?| NA/39.8Mb|
|[Butterfly] | 358Mb|x35 |-k 40 -t 42 -r 2 -z 20| 17.1h| 36m| 16.7G| NA/7.5Mb|