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r237: fall back to DP chaining more often

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Heng Li
2020-04-13 08:39:05 -04:00
parent cc166c8ff5
commit b333addb6c
2 changed files with 2 additions and 1 deletions
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2
CommandLines.h
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@@ -3,7 +3,7 @@
#include <pthread.h>
#define HA_VERSION "0.3.0-dirty-r235"
#define HA_VERSION "0.3.0-dirty-r237"
#define VERBOSE 0

1
Hash_Table.cpp
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@@ -371,6 +371,7 @@ int32_t ha_chain_lis_core(k_mer_hit *a, int32_t n_a, Chain_Data *dp, int32_t min
b[i] = i;
m = n_a;
} else m = ha_kmer_hit_lis(n_a, a, b, M);
if (m < n_a>>1) return -1;
bw_pen = 1.0 / bw_thres;
dp->score[0] = a[b[0]].good? min_sc : min_sc>>1;
dp->pre[0] = -1, dp->indels[0] = 0, dp->self_length[0] = 0;